Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00043 ATGGCTTTAAAACTGGCGAGGAGGACTGAACGAATCAGTGGTACAACATGTGTGTATTGGCTAGCTGGGAGATGCAATAGAAATCCATGCAGGTTTTTGCACAGTGAAACCCCATCGCCATCAACTGTTTATTATAATGACAATACTGACTATTCTTATCCAAAGAAACCTAAGTATAACTCGAATACGGCAATGGTTAGGAAGAGTGCAGATGGCACAAATGAGGTTTCTAAGAAGCCACCGGGGAAGACCCCTACGTATAACTCCAAGGCAGTCTTGATTAGGAAGAGTGGAGATGGGACACATGCCACTGAGGCTTCTCAGAAGCCACATGTGAAGACCCCTGCGCATAACACAAAGGAAGTGCTGATTATAAAGAGTGTAGATGATACAAGTGTGGCTCAGGCTTCTCAGAAGCCACCTCAGAAGACCCCGAACTATGACTCAAAGGCTGAATTGATTAGAAAGAGTGAAGATGGAGATGGGACCAGCATCCCGGAGGCTTCTCAGAAGCTGTCACGAAGTGTCTGTACGTACTGGATGAATGGAAATTGTGTACACGGTGACCAGTGCTGTAATTTACATTCATGGTTCTATGGTGATGGGATTTCTGCACTAGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATTGCTCTTCCAGTTGGATCAGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTCGGATGTGGGACTGCAATTCTGGTCAATGTGCTCACGTTATAAATCTCGGTGCCAAAGTTACCTCTTTGATCACTGCGGGTCCATGGGTTTTCGTTGGTATCCGGAATTCTATAAAGGCTTGGAATATCCAGACTGCTTCAGAGTTCACTCTTGATGGACCTAATGGGCAAGTCCTTGCTATGACTTTTGTCAATGATACACTTCTTGCCGGAGCAGAGGATGGTGTAATCTCTGCATGGAGATGCAGCTCTGAAAGTAAGACCCCCTTTGAACTGATTGCATCACTAAGAGGCCACACTGAAGCTGTGGTTTGTCTCTGTGTTGGTCGGAATATGCTCTACTCAGGGTCAAAGGACCATAGCATAAAGGTGTGGGACCTTGATACATTGCAGTGTGAAAGGACACTCAATGGACATACTGAGGTAGTCACATCCCTTATTTGTTGGGAGCAGTTTTTGTTATCAAGTTCATCCGACTGCACAATTAAGGTTTGGGGTTTCACTAAGGAGGAAACTTTGGAAGTAATATATACACACACACAGGAAAATGGTGTTCTTGCACTTTGTGGGAGGATTGATGCAGAAGCCAAGCCCATACTGTATTGCTCTTGCAGAGACAATTCAGTTCGCATGTATGATTTGCCATCATTTTCAGAAAGGGGTAGGCTATTTTCGCAAAAAGATGTTCGGTCATTACAGATAGGTCCTGACGGGGTTGGGCTTTTCTTCACGGGAGATGAAACCGGTTTGCTAACTGTCTGGAAATGGTTGGAAGAGCCCAAGGTGCCATGA 1503 0.4504 MALKLARRTERISGTTCVYWLAGRCNRNPCRFLHSETPSPSTVYYNDNTDYSYPKKPKYNSNTAMVRKSADGTNEVSKKPPGKTPTYNSKAVLIRKSGDGTHATEASQKPHVKTPAHNTKEVLIIKSVDDTSVAQASQKPPQKTPNYDSKAELIRKSEDGDGTSIPEASQKLSRSVCTYWMNGNCVHGDQCCNLHSWFYGDGISALAKLHEHKKVVTGIALPVGSDKLYSGSTDGTVRMWDCNSGQCAHVINLGAKVTSLITAGPWVFVGIRNSIKAWNIQTASEFTLDGPNGQVLAMTFVNDTLLAGAEDGVISAWRCSSESKTPFELIASLRGHTEAVVCLCVGRNMLYSGSKDHSIKVWDLDTLQCERTLNGHTEVVTSLICWEQFLLSSSSDCTIKVWGFTKEETLEVIYTHTQENGVLALCGRIDAEAKPILYCSCRDNSVRMYDLPSFSERGRLFSQKDVRSLQIGPDGVGLFFTGDETGLLTVWKWLEEPKVP 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00043 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 412 IPR001680 GO:0005515
Gabi4067g00043 500 Gene3D - 167 322 IPR015943 GO:0005515
Gabi4067g00043 500 Gene3D - 323 499 IPR015943 GO:0005515
Gabi4067g00043 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 372 IPR001680 GO:0005515
Gabi4067g00043 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 241 - -
Gabi4067g00043 500 MobiDBLite consensus disorder prediction 66 88 - -
Gabi4067g00043 500 SUPERFAMILY WD40 repeat-like 182 492 IPR036322 GO:0005515
Gabi4067g00043 500 PANTHER - 23 499 IPR044715 -
Gabi4067g00043 500 ProSiteProfiles Zinc finger C3H1-type profile. 171 198 IPR000571 GO:0046872
Gabi4067g00043 500 SMART c3hfinal6 173 197 IPR000571 GO:0046872
Gabi4067g00043 500 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Gabi4067g00043 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Gabi4067g00043 500 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Gabi4067g00043 500 ProSitePatterns Trp-Asp (WD) repeats signature. 350 364 IPR019775 -
Gabi4067g00043 500 SMART WD40_4 326 363 IPR001680 GO:0005515
Gabi4067g00043 500 SMART WD40_4 366 403 IPR001680 GO:0005515
Gabi4067g00043 500 SMART WD40_4 281 318 IPR001680 GO:0005515
Gabi4067g00043 500 SMART WD40_4 409 450 IPR001680 GO:0005515
Gabi4067g00043 500 SMART WD40_4 202 241 IPR001680 GO:0005515
Gabi4067g00043 500 SMART WD40_4 453 492 IPR001680 GO:0005515
Gabi4067g00043 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 333 366 - -
Gabi4067g00043 500 Pfam WD domain, G-beta repeat 328 363 IPR001680 GO:0005515
Gabi4067g00043 500 Pfam WD domain, G-beta repeat 368 402 IPR001680 GO:0005515
Gabi4067g00043 500 Pfam WD domain, G-beta repeat 208 241 IPR001680 GO:0005515
Gabi4067g00043 500 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Gabi4067g00043 500 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
Gabi4067g00043 500 PRINTS G protein beta WD-40 repeat signature 390 404 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00043 Gabi-Chr4067 580777 584674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00043 208 449 Acyl Lipid Metabolism Gene Families AT3G18860 25.746 1.14e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4067g00043 WD40 5.4e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00043 - - aip:107624831 563.148