Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00042 ATGGCTTTAAAACTGGCGAGGAGGACTGAACGAATCAGTGGTACAACATGTGTGTATTGGCTAGCTGGGAGATGCAATAGAAATCCATGCAGGTTTTTGCACAGTGAAACCCCATCGCCATCAACTGTTTATTATAATGACAATACTGACTATTCTTATCCAAAGAAACCTAAGTATAACTCGAATACGACCCCGAACTATGACTCAAAGGCTGAATTGATTAGAAAGAGTGAAGATGGAGATGGGACCAGCATCCCGGAGGCTTCTCAGAAGCTGTCACGAAGTGTCTGTACGTACTGGATGAATGGAAATTGTGTACACGGTGACCAGTGCTGTAATTTACATTCATGGTTCTATGGTGATGGGATTTCTGCACTAGCAAAGCTTCATGAACACAAGAAGGTTGTCACTGGAATTGCTCTTCCAGTTGGATCAGACAAACTTTATTCTGGCAGCACTGATGGGACAGTTCGGATGTGGGACTGCAATTCTGGTCAATGTGCTCACGTTATAAATCTCGGTGCCAAAGTTACCTCTTTGATCACTGCGGGTCCATGGGTTTTCGTTGGTATCCGGAATTCTATAAAGGCTTGGAATATCCAGACTGCTTCAGAGTTCACTCTTGATGGACCTAATGGGCAAGTCCTTGCTATGACTTTTGTCAATGATACACTTCTTGCCGGAGCAGAGGATGGTGTAATCTCTGCATGGAGATGCAGCTCTGAAAGTAAGACCCCCTTTGAACTGATTGCATCACTAAGAGGCCACACTGAAGCTGTGGTTTGTCTCTGTGTTGGTCGGAATATGCTCTACTCAGGGTCAAAGGACCATAGCATAAAGGTGTGGGACCTTGATACATTGCAGTGTGAAAGGACACTCAATGGACATACTGAGGTAGTCACATCCCTTATTTGTTGGGAGCAGTTTTTGTTATCAAGTTCATCCGACTGCACAATTAAGGTTTGGGGTTTCACTAAGGAGGAAACTTTGGAAGTAATATATACACACACACAGGAAAATGGTGTTCTTGCACTTTGTGGGAGGATTGATGCAGAAGCCAAGCCCATACTGTATTGCTCTTGCAGAGACAATTCAGTTCGCATGTATGATTTGCCATCATTTTCAGAAAGGGGTAGGCTATTTTCGCAAAAAGATGTTCGGTCATTACAGATAGGTCCTGACGGGGTTGGGCTTTTCTTCACGGGAGATGAAACCGGTTTGCTAACTGTCTGGAAATGGTTGGAAGAGCCCAAGGTGCCATGA 1263 0.4434 MALKLARRTERISGTTCVYWLAGRCNRNPCRFLHSETPSPSTVYYNDNTDYSYPKKPKYNSNTTPNYDSKAELIRKSEDGDGTSIPEASQKLSRSVCTYWMNGNCVHGDQCCNLHSWFYGDGISALAKLHEHKKVVTGIALPVGSDKLYSGSTDGTVRMWDCNSGQCAHVINLGAKVTSLITAGPWVFVGIRNSIKAWNIQTASEFTLDGPNGQVLAMTFVNDTLLAGAEDGVISAWRCSSESKTPFELIASLRGHTEAVVCLCVGRNMLYSGSKDHSIKVWDLDTLQCERTLNGHTEVVTSLICWEQFLLSSSSDCTIKVWGFTKEETLEVIYTHTQENGVLALCGRIDAEAKPILYCSCRDNSVRMYDLPSFSERGRLFSQKDVRSLQIGPDGVGLFFTGDETGLLTVWKWLEEPKVP 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00042 420 SMART c3hfinal6 93 117 IPR000571 GO:0046872
Gabi4067g00042 420 SMART c3hfinal6 12 36 IPR000571 GO:0046872
Gabi4067g00042 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 286 - -
Gabi4067g00042 420 PRINTS G protein beta WD-40 repeat signature 310 324 IPR020472 -
Gabi4067g00042 420 PRINTS G protein beta WD-40 repeat signature 270 284 IPR020472 -
Gabi4067g00042 420 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Gabi4067g00042 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 292 IPR001680 GO:0005515
Gabi4067g00042 420 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Gabi4067g00042 420 SUPERFAMILY WD40 repeat-like 102 412 IPR036322 GO:0005515
Gabi4067g00042 420 Gene3D - 13 115 - -
Gabi4067g00042 420 ProSiteProfiles Zinc finger C3H1-type profile. 11 37 IPR000571 GO:0046872
Gabi4067g00042 420 ProSitePatterns Trp-Asp (WD) repeats signature. 270 284 IPR019775 -
Gabi4067g00042 420 Gene3D - 239 419 IPR015943 GO:0005515
Gabi4067g00042 420 PANTHER - 24 419 IPR044715 -
Gabi4067g00042 420 Pfam WD domain, G-beta repeat 128 161 IPR001680 GO:0005515
Gabi4067g00042 420 Pfam WD domain, G-beta repeat 248 283 IPR001680 GO:0005515
Gabi4067g00042 420 Pfam WD domain, G-beta repeat 288 322 IPR001680 GO:0005515
Gabi4067g00042 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 332 IPR001680 GO:0005515
Gabi4067g00042 420 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 161 - -
Gabi4067g00042 420 SMART WD40_4 329 370 IPR001680 GO:0005515
Gabi4067g00042 420 SMART WD40_4 246 283 IPR001680 GO:0005515
Gabi4067g00042 420 SMART WD40_4 286 323 IPR001680 GO:0005515
Gabi4067g00042 420 SMART WD40_4 122 161 IPR001680 GO:0005515
Gabi4067g00042 420 SMART WD40_4 373 412 IPR001680 GO:0005515
Gabi4067g00042 420 SMART WD40_4 201 238 IPR001680 GO:0005515
Gabi4067g00042 420 Gene3D - 116 238 IPR015943 GO:0005515
Gabi4067g00042 420 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 170 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00042 Gabi-Chr4067 580777 584674 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00042 128 369 Acyl Lipid Metabolism Gene Families AT3G18860 25.746 1.04e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4067g00042 WD40 4.3e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00042 - - gmx:100787799 605.905