Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00041 ATGGAGGGTAAAAAAACAAAAGGCAAGCAGAAGAGAGATATAAAAAAAATTGAGAATGGAAAAGATCTCTTTGTTACTTTCACAAAGAGAAAATCTGGCCTTCAGAAGAAGGCCACAGAGATAACAACGCTTTGTGGGGCAAACGTGGATATACTCATGTTTTCTCCGACGGGGAAATCATTTTGTTATGGGGATCCTTCTTTTGAGTCAATGACAAGGTCTCGTTCAAATGAAGAACTCTCTTCTGAACGTGGCATCTATCATAATCTTGTGGAGGATCACCAAAATGTGGACATAGGTCAACTCAATCTTAAAAGTGATGCACTTCAGGACCAAACTTACGTTGCAAAAGCACGGGAGAAGGAACTAAAAGGCATTTTGAGGTCAAAAAATATTCGAGACCTTAGTACCGAACAAAACAATGAAATGGAGCCAACTTTTGGGGAACTCCAAGATAAATTAGAAAATGAAATTTCAATCATGTATGGAAGGGGTACTTCTCATGACCAAATGAATGGAGCCAATCCATATCCTACTTATGCAAGTGGGAGTAACGTATCTGAAGTTCCCTTCGGTGCCAACTACGAAGCCTATGGAACAAACCCCTTTCTTCATGATCCAAATGGTGCAAGTGGTTATGAGAATGTTGGTGGAAGTGATCCATATTTATACAATCCAAGTGATGAGAATGGTGGTTTTCCTTTCCCTCCATTCAATGGTTCTGGCCACAATCACTTCTAA 741 0.3981 MEGKKTKGKQKRDIKKIENGKDLFVTFTKRKSGLQKKATEITTLCGANVDILMFSPTGKSFCYGDPSFESMTRSRSNEELSSERGIYHNLVEDHQNVDIGQLNLKSDALQDQTYVAKAREKELKGILRSKNIRDLSTEQNNEMEPTFGELQDKLENEISIMYGRGTSHDQMNGANPYPTYASGSNVSEVPFGANYEAYGTNPFLHDPNGASGYENVGGSDPYLYNPSDENGGFPFPPFNGSGHNHF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00041 246 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Gabi4067g00041 246 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gabi4067g00041 246 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Gabi4067g00041 246 SUPERFAMILY SRF-like 8 75 IPR036879 GO:0003677|GO:0046983
Gabi4067g00041 246 PANTHER MADS BOX PROTEIN 9 156 - -
Gabi4067g00041 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 62 IPR002100 GO:0003677|GO:0046983
Gabi4067g00041 246 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Gabi4067g00041 246 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Gabi4067g00041 246 MobiDBLite consensus disorder prediction 227 246 - -
Gabi4067g00041 246 Gene3D - 19 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00041 Gabi-Chr4067 539307 540262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00041 4 159 Type I MADS-box Gene Family AT4G36590 33.918 3.77e-21 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi4067g00041 SRF-TF 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00041 - K12412 ccaj:109813207 168.703