Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00039 ATGGAGGGTAAAAAAACAAAAGGAAAACAGAAGCGAGAAATTAAGAAAATTGAGAGTGAAAAAGATCTTTTGGTCACTTTCACCAAACGAAAAACTGGCATTCACAAAAAGGCCACAGAATTGAAAACACTCTCTGGAGCAAACATTGATATACTCATGTTTTCGCCGACAGGAAAATCGTTTAGTTATGGGGATCCTTCTTTTGAGTCCATGACAAGGTCTAGTTCAGATGAAGAACACTCTTCAGAAGGTGGCACTTATCAGAAACTTGAGGAGGATCACAATAATTTGGATATAGATGAACTGAATCTTAAAAATGATTCACTTCAAGATCAAACTTATGTTGCAAAAGCACGGGAGAAAGAACTAAAGGGTCTTTTGAAGAAAAAGAATATGCGAGACCTTAGTATCGAACAAAACAATGAAATGGTGCCATATTTCGAGGAACTGGAAAATAAATTAAAAAATGGACTTTCAATCATGCATGCAGAGGTTGCTTCTCATGACCAAATGATCAGTGGAGGCAATTCATATCCTACTAATGCAAGTGGGAGTAACATATCTGAAGTTCCCTTCGGTGCCAACGACGAAGCCTATGGAACCAACCCTTTTCTTGATGATCCAAATGGTATTATTGGTCGAAGTAACAGTCATGCTCTTTCATTTGGTGGAAGTGGTTATGAGAATGTTGGTGGAAGTGATCCATATCTATACAATCCAAGTGATGAGAATGGTGGTTTTCCTTTTCCTCCGTTCAATGGTTCAGGCCACGGTCACTTCTAA 783 0.3844 MEGKKTKGKQKREIKKIESEKDLLVTFTKRKTGIHKKATELKTLSGANIDILMFSPTGKSFSYGDPSFESMTRSSSDEEHSSEGGTYQKLEEDHNNLDIDELNLKNDSLQDQTYVAKAREKELKGLLKKKNMRDLSIEQNNEMVPYFEELENKLKNGLSIMHAEVASHDQMISGGNSYPTNASGSNISEVPFGANDEAYGTNPFLDDPNGIIGRSNSHALSFGGSGYENVGGSDPYLYNPSDENGGFPFPPFNGSGHGHF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00039 260 Coils Coil 87 107 - -
Gabi4067g00039 260 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Gabi4067g00039 260 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Gabi4067g00039 260 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Gabi4067g00039 260 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Gabi4067g00039 260 PANTHER MADS BOX PROTEIN 9 166 - -
Gabi4067g00039 260 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Gabi4067g00039 260 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Gabi4067g00039 260 MobiDBLite consensus disorder prediction 60 86 - -
Gabi4067g00039 260 SUPERFAMILY SRF-like 8 73 IPR036879 GO:0003677|GO:0046983
Gabi4067g00039 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Gabi4067g00039 260 MobiDBLite consensus disorder prediction 72 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00039 Gabi-Chr4067 524571 525543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00039 4 159 Type I MADS-box Gene Family AT4G36590 34.911 2.53e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi4067g00039 SRF-TF 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00039 - K12412 ccaj:109813207 164.081