Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00034 ATGGCACCTCATGCTCCATCTTCTTCTTCTTCTTATGCTGCTTCATTTCATCCAAAAAGATATGATGTTTTTATTAGCTTTAGAGGCGAGGACACTCGGAGCAACTTCACAAGCCACCTTCGTCATGCTATGCTTCAAAAGCAGATCCAAGTATACATGGATCACGAAATGAACAAAGGAGATGAGATCTCGCCAGCACTTTCCAAAGCAATTGAAGATTCACACATATCGATCATCGTTTTCTCACAAGACTTCGCTTCCTCAAAGTGGTGCTTGGATGAACTCCTTAAAATACTCGAATGCAGGAAAGAGGGACAGGGAGTGATACCTGTCTTCTATAAAATTGACCCATCAAACGTGCGGAAGCAGAAAGGGAGTTACGAGGAAGCCTTCAAAAAACATGAACGAGATTTCAGAAACAACCAAGACAAGTTGACCGAGTGGAAACAAGCTCTGTTTGAAGCAGCCAATCTAGCCGGGTTTGACTCTGGGAAATTCGGGGAGGAATCGACACTAATCAAACAGATTGTTGAAGATGTTTCGAAAAAATTGGAATACAAGTACCCACCAAGGGAATCAAAATGCCCCTTTGGCACCGATGAAAACATTGCACCTATTGAATCATTATTAATGGAATTTCAAACCATTGGAATTTGGGGCATGGGTGGCATAGGTAAAACCACCATTGCTAAATGGTTATTTGGCAAATGCTCTTCTCAATATGAAGGATCATGTTTTTTAGAAAATATAAGGGAAAATTTTGAGAAAGGTAAACAGGCACTTCGCAAAGATCTAGTTTCCAAGCTTCTAGAAGAATATGAGAGAGAAATCAATGTGGAATCCGTTGTAGTTAAGAGGAGGCTCTCTCATAAAAGAGTCTTTGTTGTGCTTGATGATGTGAGTACTACAGAGCAATTAGAATATCTGGACGGAGAACTTCAATGCTTTGGATCGGACAGTAAAATCATCATTACATCCAGAGACATGCATGTTCTCCTATGGAAAGGAGTTGATGAAATACATAATGTAAAGAAATTGAACTTGGAGGAATCCCTTCAGCTTTTCAGCTTGAATGCTTTTAAACAGAACTATCCTTTAAAGGGGTACGAAGAGTTATCAAATAGTGCAGTTGCTTATGCTAAAGGCTTGCCATTAGTCTTGAAGGTTGTGGGTTCTTTTCTTCGTTCAAAAAGTAAAAATGAATGGGAGAGTGCATTAGAGAAATTAAGAAGGATTCCTGATGATAAAATTCAAAGTGTGTTGAAATTGAGTTATGATGGATTTAATGACGAAGAGAAGGAACTACGCTCCCTTCTGGAGGCTGAGGAAGCAGCGAAAGGGTCCAATGATGGTACTCTAAACTCATTCAACAATTATGGCACTGGGAAACAATATTTCTCCAATGCAAAGATCAACAGTGGCGCATATTCAGGTGACCGTGCCGCACTATAA 1452 0.3988 MAPHAPSSSSSYAASFHPKRYDVFISFRGEDTRSNFTSHLRHAMLQKQIQVYMDHEMNKGDEISPALSKAIEDSHISIIVFSQDFASSKWCLDELLKILECRKEGQGVIPVFYKIDPSNVRKQKGSYEEAFKKHERDFRNNQDKLTEWKQALFEAANLAGFDSGKFGEESTLIKQIVEDVSKKLEYKYPPRESKCPFGTDENIAPIESLLMEFQTIGIWGMGGIGKTTIAKWLFGKCSSQYEGSCFLENIRENFEKGKQALRKDLVSKLLEEYEREINVESVVVKRRLSHKRVFVVLDDVSTTEQLEYLDGELQCFGSDSKIIITSRDMHVLLWKGVDEIHNVKKLNLEESLQLFSLNAFKQNYPLKGYEELSNSAVAYAKGLPLVLKVVGSFLRSKSKNEWESALEKLRRIPDDKIQSVLKLSYDGFNDEEKELRSLLEAEEAAKGSNDGTLNSFNNYGTGKQYFSNAKINSGAYSGDRAAL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00034 483 Pfam NB-ARC domain 211 413 IPR002182 GO:0043531
Gabi4067g00034 483 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Gabi4067g00034 483 Gene3D - 16 183 IPR035897 -
Gabi4067g00034 483 Gene3D - 184 335 IPR027417 -
Gabi4067g00034 483 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 161 IPR035897 -
Gabi4067g00034 483 FunFam Disease resistance protein (TIR-NBS-LRR class) 347 429 - -
Gabi4067g00034 483 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 433 IPR044974 GO:0006952
Gabi4067g00034 483 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 186 - -
Gabi4067g00034 483 Pfam TIR domain 21 191 IPR000157 GO:0007165
Gabi4067g00034 483 Gene3D - 345 429 IPR042197 -
Gabi4067g00034 483 SMART till_3 20 158 IPR000157 GO:0007165
Gabi4067g00034 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 435 IPR027417 -
Gabi4067g00034 483 PRINTS Disease resistance protein signature 380 394 - -
Gabi4067g00034 483 PRINTS Disease resistance protein signature 287 301 - -
Gabi4067g00034 483 PRINTS Disease resistance protein signature 215 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00034 Gabi-Chr4067 467900 470566 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00034 19 433 WRKY Transcription Factor Family AT4G12020 30.353 1.79e-43 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00034 - - aprc:113859619 624.78