Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00033 ATGTTATCTCCAAAGTTTAGTTTGACTATAGTCATAGTCCTTTCAGTTGTAGCCACAGTTTCAAACGCAGAAACAAGCTTTGAAGTTGAAATTGAAGCTTTGAAAGCTTTCAAGAACTCCATCACCCATGACCCAAATGGAACACTTGCAAATTGGGTTGACACCCACCATCACTGCAACTGGTCTGGCATTGCATGTGGCCCATCTTCAAATCATGTTATTTCAATTTCTCTTGTTGGTTTTCAGCTCCAAGGTGAGATTACACCATTCCTTGGAAACATTTCAGGCCTTCAGGTTCTTGATTTGACTTCAAACTCATTTTCTGGGTACATTCCTTCTCAGCTTGGTCTTTGCATTCAACTTTCTCAGCTAATTCTTGTTGAAAATTCTCTCTCAGGACCAATCCCTCCTGAATTAGGAAACCTCAAAAGCCTTCAGTATTTGGATTTAGGTAATAACTACTTGAATGGAAGCCTCCCTGATAGGATATTCAACTGCACTTCTTTGTTGGGTATTGCTTTCAATTCTAACAACCTCACTGGCACAATCCCATCAAACATAGGGAATCTAGTTAACCTTATACAGATTGTAGGGTTTGAGAATAACCTTGTTGGGTCTATACCTCTTTCCATAGGTCAGTTGGGAGCTTTGCAGTCTCTTGATTTTAGCCAAAACCAGTTATCAGGTGTAATACCTAGAGAGATTGGAAATCTGACCAATTTAGAATTACTATTGTTGTTCCAAAATTCCTTGACTGGGAAAATCCCTTCTGAGCTTGGCCAGTGTAAGAAACTTTTAAATCTAGAGTTATATGATAATCAGTTCAGTGGAAGTATTCCTCCTGAGCTAGGAAATTTAGTTCAATTGGAGACATTTAGGTTATATGGGAATAACTTAAATTCCACCATTCCATCTTCCATATTCAACTTGAAATCATTAACACATTTAGAACTCTCACAGAATTACTTAGAGGGAACAATATCTTCTGAGCTTGGATCTTTGAGGTCCTTACAAGTTGTAACTCTTCATTTAAATAAGTTTACTGGGAAGATCCCTTCATCAGTAACAAACTTGACAAACTTGACATATCTGTCAATGAGCCAGAATCTCCTTTCAGGTGAACTTCCTTCAAACTTGGGTGTGCTTCATAATTTGAAGTTTCTTGTATTGAACTCCAACCTCTTTCATGGACCAATTCCACCTAGTATTACAAATTGTACTAGTCTGGTAAATGTAAGTTTATCTTTTAATGCTTTAACTGGGAAAGTTCCTGAGGGTTTTTCAAGGTTGCCTAATCTTACTTTCCTGTCTCTTGCATCCAACAAAATGTCTGGGGAAATCCCTGATGACCTCTTCAACTGCTCAAATCTTAGTACTCTAAGTTTGGCAGAGAACAACTTTAGTGGATTGATAAAATCTGGTATCAAGAACCTGTTCAATCTCTTGCGTCTGCAGCTGAATGTTAATTCTTTCATAGGACCAATTCCACCAGAGATTGGAAACTTGGATCAACTCATCACTTTGTCCCTTTCTGATAATAGTTTTTCGGGTCAAATTCCGCCAGAACTGTCCAAACTTTCTCTCCTTCAGGGGCTATACCTTCATGATAATGTATTAGAAGGAACAATACCTGATAAACTCTCTGAATTAAAACGATTAACTACGCTTGCACTGCATCAAAACAAGTTAGTTGGTCAAATACCAGATTCTATCTCAAAGCTTGAGATGCTTTCGTACTTAGACCTCCATGGCAACATACTTAATGGGTCTATTCCAAGAAGCATGGGGCAGCTAAAGCAGCTTTTAGTTTTGGATCTCTCTTACAACCACCTCACTGGATCAATTCCAGGAGATGTCATTGCACACTTCAAAGACATGCAGTTGTATCTTAACCTTTCTTACAACCACTTGGTTGGAAGTGTTCCAACTGAGCTGGGCATGTTGGAAATGATACAAGCCATTGATATTTCAAACAATAATCTTTCAGGTTTCATTCCCAAGACACTTTCTGGGTGCAGAAACCTGCTCAGTATTGATTTCTCAGGAAACAATATTTCAGGTCCTATTCCTACAGAAGCTTTTAGTCACATGGACTTGCTTCAAAGCTTAAACCTTTCAAGAAATCATTTAGAAGGTGAAATCCCTGAAATCTTGGCAGAGCTTGAGCATCTTAGTTCTCTAGATCTTTCTCAGAATAACTTGAAGGGAACTATTCCTGAGAGCTTTGCCAATCTTTCAAGCCTAATGCATCTCAACCTTTCTTTCAATCAACTTGAAGGTCGTGTACCTTTGACTGGAATATTTGCACGCATCAATGCATCTAGCATGATGGGTAACCAGGCTCTTTGTGGAACAAAATTCCTACAACCATGTAGAGAGACTAATCATCATTCACTATCCAAGAAGAGTATATCTATCATTGCTGCGCTTGGATCTCTTGCTATAATTCTACTTCTGGTGCTTGTGATTTTAATTCTCAGTGGAGGTCGCAAACTCTGCAATTCTAAACAAAGTGATAATAGTGAGAATTATGAACCTGAGTACAGTTCAGCATTGGCTCTTAAAAGATTCAATCCAAAGGAGTTAGAAAATGCCACTGGATTTTTCAGTGCAGACAAGATCATTGGTGCAAGTAGTTTGAGCACAGTTTTCAAGGGTCAATTGGAAGATGGCAACATTGTAGCCATAAAAAGATTGAATTTACACCAATTGTCTGCAAATGTTGACAAGATCTTCAAGACAGAAGCCAGCACCTTGAGCCAGCTGAGACATAGGAATTTGGTTAAGGTACTTGGATATGCTTGGGAGACTGGGAAAATGAAGGCTTTGGTTCTAGAGTACATGGAGAATGGGAATTTGGATAGCATTATACATGACAAAGGGGGGGATCAATCAAGGTGGACATTATCTGAAAGACTCCGAGTTTTCATTTCTATTGCTAATGGATTGGATTACTTGCACTCTGGTTATGATTTTCCCATTGTACACTGTGATTTAAAGCCTTCCAACATCCTTTTAGATAGAGACTGGGAAGCTCATGTCAGTGATTTTGGGACAGCACGAATACTTGGTCTTCATCTGCAGGATGGTAGTACCCTTTCCTCAGCTTTGCAAGGAACAGTTGGCTATTTGGCGCCAGAATTTGCCTACATGAGGAAAGTAACGACTAAAGCAGATGTATTCAGCTTTGGTATCATAGTAATGGAGTTTCTAACTAAAAGAAGACCAACAGGGCTCTCGGAAGAGGATGGCTTGCCAATCAGTTTGCATGAAGTAGTGGCAAAAGCCCTTGCAAATGGAATGGAACAGCTTGTTAATATAGTGGACCCTATGTTGACCTGGAATGTCAGAGAAAACTATGTGGAAGTATTGGCAGAGCTCTTTAAGCTATCCTTGGGCTGCACCCTTCCTGATCCTGAAGATCGACCTAATATGAATGTGGTGTTATCTGCTCTTATGAAGCTTGAAACAGCAACATAG 3480 0.3931 MLSPKFSLTIVIVLSVVATVSNAETSFEVEIEALKAFKNSITHDPNGTLANWVDTHHHCNWSGIACGPSSNHVISISLVGFQLQGEITPFLGNISGLQVLDLTSNSFSGYIPSQLGLCIQLSQLILVENSLSGPIPPELGNLKSLQYLDLGNNYLNGSLPDRIFNCTSLLGIAFNSNNLTGTIPSNIGNLVNLIQIVGFENNLVGSIPLSIGQLGALQSLDFSQNQLSGVIPREIGNLTNLELLLLFQNSLTGKIPSELGQCKKLLNLELYDNQFSGSIPPELGNLVQLETFRLYGNNLNSTIPSSIFNLKSLTHLELSQNYLEGTISSELGSLRSLQVVTLHLNKFTGKIPSSVTNLTNLTYLSMSQNLLSGELPSNLGVLHNLKFLVLNSNLFHGPIPPSITNCTSLVNVSLSFNALTGKVPEGFSRLPNLTFLSLASNKMSGEIPDDLFNCSNLSTLSLAENNFSGLIKSGIKNLFNLLRLQLNVNSFIGPIPPEIGNLDQLITLSLSDNSFSGQIPPELSKLSLLQGLYLHDNVLEGTIPDKLSELKRLTTLALHQNKLVGQIPDSISKLEMLSYLDLHGNILNGSIPRSMGQLKQLLVLDLSYNHLTGSIPGDVIAHFKDMQLYLNLSYNHLVGSVPTELGMLEMIQAIDISNNNLSGFIPKTLSGCRNLLSIDFSGNNISGPIPTEAFSHMDLLQSLNLSRNHLEGEIPEILAELEHLSSLDLSQNNLKGTIPESFANLSSLMHLNLSFNQLEGRVPLTGIFARINASSMMGNQALCGTKFLQPCRETNHHSLSKKSISIIAALGSLAIILLLVLVILILSGGRKLCNSKQSDNSENYEPEYSSALALKRFNPKELENATGFFSADKIIGASSLSTVFKGQLEDGNIVAIKRLNLHQLSANVDKIFKTEASTLSQLRHRNLVKVLGYAWETGKMKALVLEYMENGNLDSIIHDKGGDQSRWTLSERLRVFISIANGLDYLHSGYDFPIVHCDLKPSNILLDRDWEAHVSDFGTARILGLHLQDGSTLSSALQGTVGYLAPEFAYMRKVTTKADVFSFGIIVMEFLTKRRPTGLSEEDGLPISLHEVVAKALANGMEQLVNIVDPMLTWNVRENYVEVLAELFKLSLGCTLPDPEDRPNMNVVLSALMKLETAT 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 377 471 - -
Gabi4067g00033 1159 PRINTS Leucine-rich repeat signature 598 611 - -
Gabi4067g00033 1159 PRINTS Leucine-rich repeat signature 217 230 - -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 26 172 IPR032675 -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 520 623 IPR032675 -
Gabi4067g00033 1159 SUPERFAMILY Protein kinase-like (PK-like) 843 1153 IPR011009 -
Gabi4067g00033 1159 SMART LRR_typ_2 721 744 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 94 118 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 697 720 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 430 454 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 358 382 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 550 574 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 502 526 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 745 770 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 238 262 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 214 237 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 598 622 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 142 166 IPR003591 -
Gabi4067g00033 1159 SMART LRR_typ_2 286 310 IPR003591 -
Gabi4067g00033 1159 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 624 800 IPR032675 -
Gabi4067g00033 1159 SUPERFAMILY L domain-like 526 786 - -
Gabi4067g00033 1159 ProSiteProfiles Protein kinase domain profile. 869 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4067g00033 1159 Pfam Protein kinase domain 871 1148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4067g00033 1159 Gene3D Phosphorylase Kinase; domain 1 831 947 - -
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 829 947 - -
Gabi4067g00033 1159 SMART serkin_6 869 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 619 795 - -
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 27 182 - -
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 520 618 - -
Gabi4067g00033 1159 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Gabi4067g00033 1159 CDD STKc_IRAK 875 1155 - -
Gabi4067g00033 1159 SMART LRR_sd22_2 214 240 - -
Gabi4067g00033 1159 SMART LRR_sd22_2 142 174 - -
Gabi4067g00033 1159 SMART LRR_sd22_2 721 747 - -
Gabi4067g00033 1159 SMART LRR_sd22_2 358 381 - -
Gabi4067g00033 1159 SMART LRR_sd22_2 310 333 - -
Gabi4067g00033 1159 SMART LRR_sd22_2 550 573 - -
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase FLS2 948 1159 - -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 375 424 IPR032675 -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 278 374 IPR032675 -
Gabi4067g00033 1159 FunFam Piriformospora indica-insensitive protein 2 280 376 - -
Gabi4067g00033 1159 Gene3D Transferase(Phosphotransferase) domain 1 948 1159 - -
Gabi4067g00033 1159 SUPERFAMILY RNI-like 303 614 - -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 425 519 IPR032675 -
Gabi4067g00033 1159 Gene3D Ribonuclease Inhibitor 173 277 IPR032675 -
Gabi4067g00033 1159 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 453 1153 - -
Gabi4067g00033 1159 Pfam Leucine rich repeat 652 710 IPR001611 GO:0005515
Gabi4067g00033 1159 Pfam Leucine rich repeat 719 758 IPR001611 GO:0005515
Gabi4067g00033 1159 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 184 279 - -
Gabi4067g00033 1159 SUPERFAMILY RNI-like 72 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00033 Gabi-Chr4067 437787 443113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00033 23 1156 Receptor kinase-like Gene Family AT5G46330 54.904 0.0 1160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi4067g00033 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00033 K13420 - gmx:100817960 1840.08