Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4067g00010 ATGGATTCAATAGTTTCAGGGTTTTTAACCACTATGTTGGATAGGGTAGCAACAAGAGCTTTCCAAGATATTTCCATGGCAAGGGGTCTCCATGCTGATGTGGGGTCCCTCCAAAACTCTCTGAGAATCTTCAGTGCCTTCATTGTTGATGCTGAGAACAAGCAAACAGAAAGCCAAAGCATATTGGTGTGGCTGCAGCAGCTCAAAGATGCTTTCTTTGATGCCCGTGACATCTTGGATGAGATTGAGTGTGAGGCCTTGAGGAATCAAGTTGTGAAGAGACATGGAAGCTTCACCAGTAAGGTACACCTCTTTTTCTCATCCTCTAACCCTCTTGCATTTCGTGTTAAGATGGCAAAAAAAATCAAGGACATCAAGGAGAGAATAGATGAGATAGCTTCTCTTAGGATGAAGTTGGGTCTCTCAGTCTCAGAGAATCATGTGAGTAATTATGTGCTGCCACTCAATCAGAAGATGGCTTGGAGGGAGACACATTCTTATGTTAGGCCTTCCCATGTGATTGGTAGAGATGAGGAGAAAGAAAAGATCATTGAGTCTTTGATGGCTCCACCATCAGATGGTGATGGTATGGATGTTATTCCAATTGTTGGAATTGGAGGGTTGGGGAAGACCACACTTGCCCAATTGATTTACAATGATGATAGGGTGATTGAGCATTTTGATTTGCGGATGTGGGTGTTTGTGTCTGAAGATTTTGTTGTTAAGAGACTGGTACTTGATATTCTTAAAGCTATGCATGGAATAGATGTAGATGCTCCCAACTTTAGTTTTGATCAGTTACAAAATCTACTTCGTGAGGGATTACATGGGAAGAAATCTTTACTTGTTCTTGATGACGTTTGGAATGAAGATTATAGAGGGTGGCTTGAATTGAGAAATCTTTTAGTAGGGATGCATGATGAAAATAAAAAAATTGGTAACAAGATTATCACAACCACTCGTAGTGACAAGGTTGCTTTGATAATGGGGAATGTTTATAAACACAACCTGAAATATCTTCCTGAAGAAGATTGTTTAAAGCTATTTGTTAAGTGTGCATTTCCAGCAGGAGAGGAGAAACAGCATCCAAGGCTTATGGAAATTGGGAAGGAGATTGCTAGAAAGTGCAAAGGGGTGCCCCTGGCAGTGGTGAGTTTAGGGTGCTTGCTTTACTCAAAACTTGATGAAAGTGAGTGGAAGAAAATAAGAGATAGTGAAATTTGGAAAATGAAACAAGAAGATGATGGCATTTTGGCTGCATTAAAACTAAGCTATAATCACTTGCCATCTGAATTGAAACAATGTTTCTCTTATACTTCAATTTTTCCTAAGGGTTATGAGTATACAAATCTGGAGTTGATTTCATTTTGGATGGCCCATGGACTACTACAAACCAAAAATGAAGATCAAGAGCCTGAAGATCTTGGGGAGTTTTATATTCAGGAGTTGGTTTCAAGATCTTTCTTTGAAGGTGCTCCTGAAGAACAGGTGGTCATGGATGGTCTTATTTTTGAAGAACTTAAGCTTCTAGGCATCTCCTTTTTCAAAATCCATGATCTTGTTCACGACCTTGCTGTGTCCACAATGCAAAGTGAAAGGGCAGTAGTAAAATTTAATTCAACAAATGTTAAAGAAAAGGTGCAGCATTTATCATTTTCAGAAAGTGGTGAAGGAGTTCCAACTTTTGGTCAAATGTTAAATAAGGTCCGAACCATTGGATTCTGGCATGCAGGTCAAAGTGCAGATGCAATCACTGAACCATTTGTCAAGTGGATCTGCAAGGAATTCAAGTACCTCAGGGTGTTGAATATACAAGGTTCAAATTTTCAATTCTTGCCGGATTGTTTCAACAAAATGAAACATTTGAGGTATCTTAATCTAAGCTATTGCCAGAGAATGGAAAAACTCCCAGATTCCATTTGCAAGCTCCAAAACCTCGAGGTTTTAAATCTATGTAGATGTGTATCACTTAAATGTATTCCAAAAAACTTGAGGAATCTTATCAGCCTTAGGATTTTGTGGATTACCACACAAGCCACTGATTTGTCTTTCATAAGTATTGGGAGCTTGAAATATCTACAAATTTTAATTTTGTGGAATTGTGAAAATTTAGTCTTCCTTCCACGTGATTTAAGACACTTGACTGCTTTAAAGAGGCTGAGTATTGAGGATTGTGAAGAGGTGATTAGTTTTGAGGATGAAAGAGAAGAAGAAAATGAAAACTACTCCTTGAAACTTGAACAGTTTTCAATTGATAAATTGCCCAAATTGACTGCTTTACCTGGTTGGCTTAGAAGATCTACAAAAACTTTGAGATACATGGGTCTTTCAGAATGTCCAAGCTTAAGGGCATTGCCAGAATGGTTGCCAAGTCTAACATCTCTTGAAACGCTTCTCATTGGTGATTGTCCAAACTTGACACTACCCCAGCATATGGATCGTCTTCATAACCTTCAGAACTTAAAGATATATGGATGCCCTCAGCTAGTTGAGAGATGCAAAAGAAATTCAGGCCCTGACTGGTCCAAAATAGCTCATATCCCAAATGTTGAAGTAAGTGTGCATTGCTGA 2571 0.3882 MDSIVSGFLTTMLDRVATRAFQDISMARGLHADVGSLQNSLRIFSAFIVDAENKQTESQSILVWLQQLKDAFFDARDILDEIECEALRNQVVKRHGSFTSKVHLFFSSSNPLAFRVKMAKKIKDIKERIDEIASLRMKLGLSVSENHVSNYVLPLNQKMAWRETHSYVRPSHVIGRDEEKEKIIESLMAPPSDGDGMDVIPIVGIGGLGKTTLAQLIYNDDRVIEHFDLRMWVFVSEDFVVKRLVLDILKAMHGIDVDAPNFSFDQLQNLLREGLHGKKSLLVLDDVWNEDYRGWLELRNLLVGMHDENKKIGNKIITTTRSDKVALIMGNVYKHNLKYLPEEDCLKLFVKCAFPAGEEKQHPRLMEIGKEIARKCKGVPLAVVSLGCLLYSKLDESEWKKIRDSEIWKMKQEDDGILAALKLSYNHLPSELKQCFSYTSIFPKGYEYTNLELISFWMAHGLLQTKNEDQEPEDLGEFYIQELVSRSFFEGAPEEQVVMDGLIFEELKLLGISFFKIHDLVHDLAVSTMQSERAVVKFNSTNVKEKVQHLSFSESGEGVPTFGQMLNKVRTIGFWHAGQSADAITEPFVKWICKEFKYLRVLNIQGSNFQFLPDCFNKMKHLRYLNLSYCQRMEKLPDSICKLQNLEVLNLCRCVSLKCIPKNLRNLISLRILWITTQATDLSFISIGSLKYLQILILWNCENLVFLPRDLRHLTALKRLSIEDCEEVISFEDEREEENENYSLKLEQFSIDKLPKLTALPGWLRRSTKTLRYMGLSECPSLRALPEWLPSLTSLETLLIGDCPNLTLPQHMDRLHNLQNLKIYGCPQLVERCKRNSGPDWSKIAHIPNVEVSVHC 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4067g00010 856 PRINTS Disease resistance protein signature 376 390 - -
Gabi4067g00010 856 PRINTS Disease resistance protein signature 617 633 - -
Gabi4067g00010 856 PRINTS Disease resistance protein signature 199 214 - -
Gabi4067g00010 856 PRINTS Disease resistance protein signature 274 288 - -
Gabi4067g00010 856 Pfam NB-ARC domain 177 426 IPR002182 GO:0043531
Gabi4067g00010 856 FunFam Probable disease resistance protein At1g61300 155 334 - -
Gabi4067g00010 856 Pfam Rx N-terminal domain 8 97 IPR041118 -
Gabi4067g00010 856 SUPERFAMILY L domain-like 516 849 - -
Gabi4067g00010 856 Gene3D - 157 333 IPR027417 -
Gabi4067g00010 856 Gene3D - 8 125 - -
Gabi4067g00010 856 Gene3D Ribonuclease Inhibitor 545 851 IPR032675 -
Gabi4067g00010 856 PANTHER DISEASE RESISTANCE PROTEIN RP 69 823 IPR044974 GO:0006952
Gabi4067g00010 856 Gene3D - 339 429 IPR042197 -
Gabi4067g00010 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 438 IPR027417 -
Gabi4067g00010 856 CDD RX-CC_like 22 134 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4067g00010 Gabi-Chr4067 119307 121877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4067g00010 200 829 WRKY Transcription Factor Family AT5G45050 22.741 1.52e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4067g00010 - - mtr:25493373 1318.91