Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4066g00001 ATGCCAGATTTGGGAAACCTATCTCTCTCTGCTACTCTCGCACTCTCTCACTGCTCCAACATCAAGCCCTCGGATGTCACCGATTCCGCCCCGGTCAAAACCCGACCCAATGGCTACGGTTCCGATAATGGCAGTGAAGCTCGGATTTTGAAGCGGAGCCGCGGTTCCTTGGATAGGGTCAAGACCCGACCCAATGACAAGGGCTTGGAGGATCGCGTCAAGGATCCTTTCTCTCTTCCCTTTCTTGTTGGCGCTCCAAAGATGAGTGAATGCTCTTTTTGCCACCATTTTATCTATCCTGGAGAGGAGCTATTATGTTCTGTTCGTGGATGTGACGCCTGCTACCATACGGAATGTGCAAAAGAAGCCGTTGGGGTTTCAAATCTGAAGAAATTCAAGTGTCCACAGCATGTATGCTTCATTTGTAAACAAAAACTGCACTTGAAGTGTGTGCGTTGCACAATAGCATTCCATAATAAATGTGCACCATGGCCAGATGCTGTGATGCATATAAAAGATCATCCTGGGCAAGTTGTTTGTTGGAGGCATCCTTCTGATTGGCGCCTGGATAGAAAGCCTGATGCTTTAACAAGTGACATTTCGGAAGTATTTTGTCGATTGCCTCTTCCCTTTATCAATGAGGAGTTTAAGATTGACTTCACTTGGAAAGACATGGACAGTAAGATGGAGCCACCACCATATGTACACATAAGACGCAATGCATACATAGTGAAGAAGAAGCGTAGTGATGTAGATGATGGGGCAGGGTGCAGTTGCAGTTCTACGTGCTCTGATAGTTGTGTGTGCAGGGTTCAATGCATAAGCTGCTCAAAGGCTTGTCGCTGCTCAGAAAGTTGCAATAATCGGCCCTTTCGCAAGGAGAAAAAGATCAAGATTGTCAAGACTGAACTTTGTGGATGGGGAGTAGAGGCCGCTGAAACAATCGATAAAGGTGGATTTATTATTGAGTATATTGGAGAAGTCATTGATGATGCTTCATGTGAAGAACGGCTTTGGGAAATGAAACGCATGGGTGTACAAAATTTTTACATGTGTGAGATTCGGAAAGACTTTACAATAGATGCAACTTTCAAGGGAAATACATCACGATTTTTAAACCATAGTTGTGATCCCAACTGTGTTTTGGAAAAGTGGCAAGTTGATGGTGAAACACGTGTGGGTGTATTTGCTGCTCGTTCAATAGAAGTTGGAGAGCCGTTGACATACGATTACAGATTTGTGCAATTTGGTCCAGAGGTGAAATGCCACTGTGGTGCTCCAAATTGTCAAGGCTTTCTAGGGACGAAAAAGAAAATTGGTAAGGTAGACCTCTGTTGGGGCTCAAAACGTAAACGAACCTCAAATGCTCGCATTACAATAGTAACAGCTGTATGA 1395 0.4444 MPDLGNLSLSATLALSHCSNIKPSDVTDSAPVKTRPNGYGSDNGSEARILKRSRGSLDRVKTRPNDKGLEDRVKDPFSLPFLVGAPKMSECSFCHHFIYPGEELLCSVRGCDACYHTECAKEAVGVSNLKKFKCPQHVCFICKQKLHLKCVRCTIAFHNKCAPWPDAVMHIKDHPGQVVCWRHPSDWRLDRKPDALTSDISEVFCRLPLPFINEEFKIDFTWKDMDSKMEPPPYVHIRRNAYIVKKKRSDVDDGAGCSCSSTCSDSCVCRVQCISCSKACRCSESCNNRPFRKEKKIKIVKTELCGWGVEAAETIDKGGFIIEYIGEVIDDASCEERLWEMKRMGVQNFYMCEIRKDFTIDATFKGNTSRFLNHSCDPNCVLEKWQVDGETRVGVFAARSIEVGEPLTYDYRFVQFGPEVKCHCGAPNCQGFLGTKKKIGKVDLCWGSKRKRTSNARITIVTAV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4066g00001 464 PANTHER SET DOMAIN PROTEINS 60 454 - -
Gabi4066g00001 464 ProSiteProfiles Post-SET domain profile. 418 434 IPR003616 -
Gabi4066g00001 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 186 IPR013083 -
Gabi4066g00001 464 FunFam Histone-lysine N-methyltransferase 211 444 - -
Gabi4066g00001 464 SMART PHD_3 90 138 IPR001965 -
Gabi4066g00001 464 CDD SET_ASHR3-like 296 434 - -
Gabi4066g00001 464 ProSiteProfiles SET domain profile. 295 412 IPR001214 GO:0005515
Gabi4066g00001 464 SMART shorttest3 252 296 IPR006560 GO:0005634|GO:0042054
Gabi4066g00001 464 SMART PostSET_3 418 434 IPR003616 -
Gabi4066g00001 464 ProSiteProfiles AWS domain profile. 252 295 IPR006560 GO:0005634|GO:0042054
Gabi4066g00001 464 Gene3D SET domain 212 452 IPR046341 -
Gabi4066g00001 464 SUPERFAMILY SET domain 215 424 IPR046341 -
Gabi4066g00001 464 MobiDBLite consensus disorder prediction 26 41 - -
Gabi4066g00001 464 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 463 IPR025787 -
Gabi4066g00001 464 SMART set_7 295 418 IPR001214 GO:0005515
Gabi4066g00001 464 Pfam SET domain 306 411 IPR001214 GO:0005515
Gabi4066g00001 464 MobiDBLite consensus disorder prediction 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4066g00001 Gabi-Chr4066 43576 52114 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4066g00001 276 433 C2H2 Transcription Factor Family AT2G23740 36.313 1.91e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi4066g00001 SET 2.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4066g00001 - - gmx:100791481 772.696