Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4062g00001 ATGATTTTGGAAGACATATGGGCCGGTTCAAATGGTCACGTACAAATGCAGCGTGAACCGAGTGGTCATCCTCAAACAGGTATCCAAATGGGAGGTCGACAATATCAGGCTCTTCATCTTATGGCCTTGACGAAGAAGGCCGGTCTTGTCATTGCTTCGTGCGTCTCTCACCTTCGGCATTGCTTGGTCTTCTGCGGCCCGCCATTTTTACAAAATACCTACAATGAAAGTGGAAACATAAGACAAGAAAGTTGTTTGCTGGTGTGTTGGTTCACAGCTGCTGCTCTTGAAATCTTCAGGAATTATGCGACTTGGGACCCTGAAACTCTTAGCTCCAATGGTGGAAACTTCACCTTGGGGTTCTTCAGCTCTGACTCTACAAATCGCTATGTAGGAATTTGGTGGAAGTTCAACCTCACTGTCACATGGGTGGCTAATAGAAACCAACCACTGAATGATTCTTCTGGGGTTGTTACAATATCTGAAGACGGCAATCTTGTGGTATTGAATGGGAAGAAACAGGTTGTTTGGTCATCAAATGTGTCCAATATTGCATCCAATTCTACTTTCCAACTTTCAGATTATGGAAGCCTTCTCTTGCTGGATAACACAACAGGAAACACCATATGGGAGAGTTTCAACAATCCCTCAAATACTTTGTTACCCCGTATGAAAATTAGAAGCAACAAAATAACAGGTGACAAATTAGAACTTACATCATGGAAAAGCCTTTCTGATCCATCCATTGGAAGCTTTTCTGCTAGTGTTGAACGCCTACAGATTCCTGAAGTGTTCATTTGGAATGGAACTCAACCATACTGGCGCAGTGGTCCATGGAATGGTCAACTTTTTCTAGGGATACCAAACATGGGAACTTCGTATCTTAGTGGTTTTCAAGTTCAAGATGATGGGAATGGAACCATTGATGTATCTTTTACAGCATATGGGATGGGACCCTTAATGTATACCTTGAATTCCCAAGGCCAATTGGTGGAAAATCATTGGTATGATGAGCAATGGCAAGTTCCATGGACTAATCACCAATCAGATTGTGATGTTTATGGTATATGTGGGGCATTTGCAAGCTGTAATTCAGAGAGTTCGCCAATATGTAGCTGTTTGATAGGGTTTGAGCCAAGAAACAAAGAGGAATGGAATAGACAAAACTGGACTAATGGATGTGTTAGAAGCACACCTCTGCAATGTGAAAGGACCAACAATCAAAACACAAGTGTGGACAGCAATAAAGCAGATGGGTTTTTGACATTGCAGATGATCAAAGTTCCTGATTTTGCACAAGGGTCATCATCTGTTACACAAGACACATGCAGAAGCGGGTGCTTGGAGAATTGCTCTTGCATTGCATATGCATATGATAATGCAATTGGCTGTATGTCTTGGAATAGGGATCTAATTGATATTCAACAATTCCCAAGTGGAGGAACTGATCTATACATTCGTGTAGCCAATACAGAACTTGGTATGCCAGACAAAGGGCGAAACATAAAAGTCATCATTATAGTTACAGTGGTAATAGCAACTTTCATAATTTTCACTTGTGCGTATGTCATTTGGAGAAGGAAAAAGAAGAATTCTCCAATTATTCGATTTAACAAAGGTGTAACATCTAAATCTAAAGAACTCGCAAATGACAAAGTAATTGGAGAATTATCACAAGCTAAGCTACAGGAGCTATTACAATTTAGCTTTGAAAAGCTTGCAAGTGCCACAAACTACTTCCACTCATCCAACAAACTTGGCCAGGGTGGTTTCGGTCCAGTATACAAGGGGAAACTGCAAGATGGTAAGGAAATAGCAGTTAAAAGACTTTCCAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTTTTGGTAATTTCTAAACTTCAACACCGCAATCTTGTAAAACTTCTTGGCTGCTGTATTGAAGGAGAAGAAAAGATGCTGATATATGAGTACATGCCAAATAGAAGTTTGGATGCATATGTGTTTGATCCATCAAAAAATGAACTCCTAGATTGGAGAAAGCGCTTTAGCATAATAGAAGGAATAGCTAGAGGGTTGCTTTATCTTCATAGAGATTCAAGGCTAAAAATCATACATAGAGATTTGAAGGCAAGTAATATCTTGCTAGATGAGGAACTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATCTTTGGAGGGAGTGAAGATCAAGCCAATACCCAAAGGGTTGTGGGAACCTATGGCTATATGTCTCCTGAATATGCAATGCAAGGACAGTTTTCTGAAAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTACTGGAGATTGTTTGTGGAAGACGAAACTCAAGCTTTTATGACAATGAAAATTCTCTTACCCTCTTGGGACTTGTCTGGATACAATGGAAGGAAGAAAATGTTTTATCTTTAGTAGATCCAGGAATATATGATCCTAGCCTTGAAAAGAAAATTATGAGGTGCATACACATAGGACTTTTGTGTGTACAAGAATTTGCAACAGACAGGCCCAATATGGCTGCAGTAATTTCTATGCTTAACAGTGAGATTGTGGATCTTCCTCCTCCAAGGCAACCTGCCTTCATCCTGAGGCAGAATATGCTTAGTTCACTATCCTCTGATGAAAGCCTTAGATTGCATTCCATCAACAATGTCAGTATTACAGACATCCATGGCAGATAG 2697 0.4004 MILEDIWAGSNGHVQMQREPSGHPQTGIQMGGRQYQALHLMALTKKAGLVIASCVSHLRHCLVFCGPPFLQNTYNESGNIRQESCLLVCWFTAAALEIFRNYATWDPETLSSNGGNFTLGFFSSDSTNRYVGIWWKFNLTVTWVANRNQPLNDSSGVVTISEDGNLVVLNGKKQVVWSSNVSNIASNSTFQLSDYGSLLLLDNTTGNTIWESFNNPSNTLLPRMKIRSNKITGDKLELTSWKSLSDPSIGSFSASVERLQIPEVFIWNGTQPYWRSGPWNGQLFLGIPNMGTSYLSGFQVQDDGNGTIDVSFTAYGMGPLMYTLNSQGQLVENHWYDEQWQVPWTNHQSDCDVYGICGAFASCNSESSPICSCLIGFEPRNKEEWNRQNWTNGCVRSTPLQCERTNNQNTSVDSNKADGFLTLQMIKVPDFAQGSSSVTQDTCRSGCLENCSCIAYAYDNAIGCMSWNRDLIDIQQFPSGGTDLYIRVANTELGMPDKGRNIKVIIIVTVVIATFIIFTCAYVIWRRKKKNSPIIRFNKGVTSKSKELANDKVIGELSQAKLQELLQFSFEKLASATNYFHSSNKLGQGGFGPVYKGKLQDGKEIAVKRLSRASGQGLEEFMNEVLVISKLQHRNLVKLLGCCIEGEEKMLIYEYMPNRSLDAYVFDPSKNELLDWRKRFSIIEGIARGLLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGSEDQANTQRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIVCGRRNSSFYDNENSLTLLGLVWIQWKEENVLSLVDPGIYDPSLEKKIMRCIHIGLLCVQEFATDRPNMAAVISMLNSEIVDLPPPRQPAFILRQNMLSSLSSDESLRLHSINNVSITDIHGR 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4062g00001 898 Gene3D Transferase(Phosphotransferase) domain 1 656 857 - -
Gabi4062g00001 898 Pfam S-locus glycoprotein domain 274 380 IPR000858 GO:0048544
Gabi4062g00001 898 Gene3D - 96 214 IPR036426 -
Gabi4062g00001 898 ProSiteProfiles Bulb-type lectin domain profile. 95 213 IPR001480 -
Gabi4062g00001 898 Pfam Protein tyrosine and serine/threonine kinase 582 851 IPR001245 GO:0004672|GO:0006468
Gabi4062g00001 898 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 656 859 - -
Gabi4062g00001 898 Pfam PAN-like domain 415 474 IPR003609 -
Gabi4062g00001 898 Pfam Domain of unknown function (DUF3403) 853 898 IPR021820 GO:0004674
Gabi4062g00001 898 SMART serkin_6 580 827 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4062g00001 898 ProSiteProfiles PAN/Apple domain profile. 402 489 IPR003609 -
Gabi4062g00001 898 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 544 655 - -
Gabi4062g00001 898 SMART ntp_6 415 488 IPR003609 -
Gabi4062g00001 898 SMART blect_4 101 216 IPR001480 -
Gabi4062g00001 898 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 89 842 - -
Gabi4062g00001 898 CDD PAN_AP_plant 398 489 - -
Gabi4062g00001 898 ProSiteProfiles Protein kinase domain profile. 580 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4062g00001 898 PIRSF SRK 82 898 IPR024171 GO:0004674
Gabi4062g00001 898 CDD STKc_IRAK 586 852 - -
Gabi4062g00001 898 SUPERFAMILY Protein kinase-like (PK-like) 565 880 IPR011009 -
Gabi4062g00001 898 CDD B_lectin 108 216 IPR001480 -
Gabi4062g00001 898 Pfam D-mannose binding lectin 140 242 IPR001480 -
Gabi4062g00001 898 SUPERFAMILY alpha-D-mannose-specific plant lectins 131 281 IPR036426 -
Gabi4062g00001 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Gabi4062g00001 898 Gene3D Phosphorylase Kinase; domain 1 540 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4062g00001 Gabi-Chr4062 19413 29021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4062g00001 498 869 Receptor kinase-like Gene Family AT4G05200 52.151 2.51e-130 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4062g00001 PK_Tyr_Ser-Thr 2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4062g00001 - - gsj:114424251 1101.66