Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4061g00004 ATGGCTCCGATGGGCAGTGCCACCGCTATTCTCGCCGGACCCAACCCGACCCACCTCGCCACAGAGATCCGATTCAGAGGCGTCAGGAAGAGACCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGCAAGAAGGCCCGGGTCTGGCTAGGCACATATGACACAGCAGAGGAAGCGGCGCGTGCGTACGACGCGGCGGCGCGTGAGTTCCGAGGCGCGAGGGCGAAGACCAATTTTCCCAACGCATCCGAGTTCATTGTGAACAACTCCACGCGCAGTCCCAGCCAGAGCAGCACCCTTGAATCCTCTTCTCCTCCTCCGTCATTCGCCGTCGCCGGCGCGCTGATGTTCCCGGTGGCTCGACCGATGTTGTTCTTCGACGCGTTTGCTCGTGCTGAGATTCTCCCGGTGGCAGTTAGTGGCGGAGCACAGAGCGACTCCGATTCCTCCTCCGTCGTGAACTACGAGCGGGTCCCACATCAGAGTCTGTTAGATCTTGACCTTAATGCCCCTGCTTCACCGGAGGATGATTGA 537 0.6127 MAPMGSATAILAGPNPTHLATEIRFRGVRKRPWGRYAAEIRDPGKKARVWLGTYDTAEEAARAYDAAAREFRGARAKTNFPNASEFIVNNSTRSPSQSSTLESSSPPPSFAVAGALMFPVARPMLFFDAFARAEILPVAVSGGAQSDSDSSSVVNYERVPHQSLLDLDLNAPASPEDD 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4061g00004 178 Gene3D AP2/ERF domain 23 82 IPR036955 GO:0003700|GO:0006355
Gabi4061g00004 178 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Gabi4061g00004 178 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Gabi4061g00004 178 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Gabi4061g00004 178 MobiDBLite consensus disorder prediction 82 106 - -
Gabi4061g00004 178 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Gabi4061g00004 178 FunFam Ethylene-responsive transcription factor 2 24 82 - -
Gabi4061g00004 178 CDD AP2 24 83 IPR001471 GO:0003700|GO:0006355
Gabi4061g00004 178 SUPERFAMILY DNA-binding domain 25 81 IPR016177 GO:0003677
Gabi4061g00004 178 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Gabi4061g00004 178 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4061g00004 Gabi-Chr4061 52365 53155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4061g00004 15 135 AP2-EREBP Transcription Factor Family AT3G15210 55.102 3.38e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi4061g00004 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4061g00004 K09286 - gmx:100786709 196.438