Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4061g00003 ATGGTGTATAACATCATATCTTGTTCTTATTTATATATTTGGTTCTTATTATCCTCCTACATGACGGTAACTTCCACTTCACTGGACAGTATAGCAGTGAGTGAATCTATCCGAGAGGGTGAGACTTTAGTTTCAGCAGATGGAACTTTTGAAGTGGGTTTCTTCAGCCCTGGAAATTCAACAGGTCGATACTTGGGTGTATGGCACCGCAATATAACCCCTTTAACAGTGATATGGGTGGCCAACCGAGAAACACCTCTCCACAATAATTCAGGAGTTTTAAAACTCAATCAAAGTGGCGTTCTTGTAATTCTCAATAGCACAAACAACAGTGTTTGGTCGTCCAACATATCAAGCCAAGCAGTGAGTAATCCAATATCGCAGCTCTTGAACTCAGGAAATCTTGTGGTGAAAAATGGACAAGGCACCGACGAGGACCAGTTTTTATGGCAAAGTTTTGATTATCCCGGTGATACATTTCTGTCGGGAATGAAGCTTGGTTGGAACTTAGAAACTGGTCTAGAAAGGTTTCTATCATCTTGGAAAAGTGAAGATGATCCAGCTAAGGGAGACTATTCTATAAAACTCGACCTTAGAGGATATCCGCAAATTTTTAGATTCAAGGGATCTTCAATAGAATCTAGACTAGGGTCATGGAATGGCCTTACTTTTACGGGATATCCAACTCGTCTGGTGGCACCAAAAGATAGATATGAATTCGTTTTGAATGAAAAAGAAGTGTATTGTGAGAATCATCTCATAGACAGATCCATGTTTTCTATATATACCCTGATCCCTTCAGGCGTGGGGCAAAATTTAGTTTGGACAAGTCAAACAAGCAGCAAGCAAGTTATATCAATTGGAGGAGAGGACCCGTGTGAAAGTTATGGCTTCTGTGGTGCATATTCTATATGCAAGACGGATGATAACAATTTTCCATCTTGTGAATGCCTCAAAGGACTTGTTCCCAAGTTTCCTGAACAATGGAATGTTTCAAATGGGTCTAACGGTTGTGTTCCAAGGAATAAATCTGATTGTAGTAACAGTACTAACACGGATGGGTTCTGGAGGTACACTGCCATGAAATTACCAGACACTTCTTCATCATGGTATAGTAAGACAATGAACAATGAGGAATGTCGGATATTATGTCTGAAAAACTGTTCTTGTACATCATTTGCTAATTTGGATATCCGTAATGGAGGAAGTGGCTGTTTACTTTGGTTTCATGATCTGATTGACATGAGGCAATTCTCTCAGGGGGGACAAGACCTTTATATCAGAGTCCCTGCTTCAGAACTAGAAGTTCATGTTGCGGTAAATGGCCATGGGGACAACAAGAAAAAGCTGGTAGGAATCACAGTTGGTGTGATTTTTACCGTATTAACTACATTCGTCACCACAATGACACTTAGAAAGCGAGGTGTAGCAAGCAAAATTTACGGGACACATTTCAACAATAGACTGAGGAATGAAGACATTGATCTGCCAACATTTGATTTGGCAATCATAACTAAAGCTACAGAAAACTTTTCAAGCAGTAACAAGCTGGGAGAAGGTGGCTTTGGACCAGTATACAAGGGAAAACTCAATGATGGGCAACTGATAGCTGTGAAAAGGCTTTCAAACAAGTCTGGACAAGGAATTGAAGAGTTCAAGAATGAAGTAGTGTTGATAGCTCAACTCCAGCACCGAAATCTTGTTAAGCTTCTTGCTTGCTGCATTCAAGGAGAAGAAAAAATGTTGATATATGAATACATGCCTAACAAAAGCTTGGACTACTTTATTTTTGATGAAACGAGAAGGAAGGTCTTAGATTGGGCTAAGCGTTTCAACATTATCACTGGCATTGCTCGAGGACTTCTCTATCTTCATCAAGACTCTAGACTGAGGATTATTCATAGAGATCTAAAAACCAGCAATGTTCTACTAGATGCAAATTTGGATCCAAAAATATCGGACTTTGGCTTGGCTCGAATATTTTTGGGAGATCAAGTGGAGGCAAACACAAACAGGGTGGCTGGAACATATGGTTACATGTCTCCTGAGTATGCCGTGTTCGGGCATTTCTCAATGAAATCAGATGTGTATAGTTATGGTGTGATAATACTAGAGATTGTAAGTGGGAAGAAGAACAGAGAATTTTCAGACCCAGAACACTACCGTAACCTTCTTGGACATGCATGGAAATTATGGGCCGATGAGAGGGCACTAGGGCTATTGGATGAAGTTCTAGGAGAACGATGCACACTCTCTGAAGTCATGCGATGCATACATGTGGGCTTATTATGCGTGCAACAAAGATCAGAAGATAGGCCAGACATGTCATCTGTGGTTTTAATGTTGAATGGTGAGAAATTATTGCCAAAACCAAAGTTTCCTGGCTTTTACACTGAAGTACATTCTTTGTCGGCAAATTGTGACCTGTGCTCAGCTAATGGAATTTCCATTACAGTGTTAGATGGAAGATAG 2472 0.4025 MVYNIISCSYLYIWFLLSSYMTVTSTSLDSIAVSESIREGETLVSADGTFEVGFFSPGNSTGRYLGVWHRNITPLTVIWVANRETPLHNNSGVLKLNQSGVLVILNSTNNSVWSSNISSQAVSNPISQLLNSGNLVVKNGQGTDEDQFLWQSFDYPGDTFLSGMKLGWNLETGLERFLSSWKSEDDPAKGDYSIKLDLRGYPQIFRFKGSSIESRLGSWNGLTFTGYPTRLVAPKDRYEFVLNEKEVYCENHLIDRSMFSIYTLIPSGVGQNLVWTSQTSSKQVISIGGEDPCESYGFCGAYSICKTDDNNFPSCECLKGLVPKFPEQWNVSNGSNGCVPRNKSDCSNSTNTDGFWRYTAMKLPDTSSSWYSKTMNNEECRILCLKNCSCTSFANLDIRNGGSGCLLWFHDLIDMRQFSQGGQDLYIRVPASELEVHVAVNGHGDNKKKLVGITVGVIFTVLTTFVTTMTLRKRGVASKIYGTHFNNRLRNEDIDLPTFDLAIITKATENFSSSNKLGEGGFGPVYKGKLNDGQLIAVKRLSNKSGQGIEEFKNEVVLIAQLQHRNLVKLLACCIQGEEKMLIYEYMPNKSLDYFIFDETRRKVLDWAKRFNIITGIARGLLYLHQDSRLRIIHRDLKTSNVLLDANLDPKISDFGLARIFLGDQVEANTNRVAGTYGYMSPEYAVFGHFSMKSDVYSYGVIILEIVSGKKNREFSDPEHYRNLLGHAWKLWADERALGLLDEVLGERCTLSEVMRCIHVGLLCVQQRSEDRPDMSSVVLMLNGEKLLPKPKFPGFYTEVHSLSANCDLCSANGISITVLDGR 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4061g00003 823 Gene3D Transferase(Phosphotransferase) domain 1 587 788 - -
Gabi4061g00003 823 SUPERFAMILY Protein kinase-like (PK-like) 496 782 IPR011009 -
Gabi4061g00003 823 PIRSF SRK 1 823 IPR024171 GO:0004674
Gabi4061g00003 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 345 429 - -
Gabi4061g00003 823 Pfam D-mannose binding lectin 76 182 IPR001480 -
Gabi4061g00003 823 SMART serkin_6 511 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4061g00003 823 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4061g00003 823 ProSiteProfiles Bulb-type lectin domain profile. 28 150 IPR001480 -
Gabi4061g00003 823 ProSiteProfiles PAN/Apple domain profile. 346 430 IPR003609 -
Gabi4061g00003 823 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 772 - -
Gabi4061g00003 823 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 187 IPR036426 -
Gabi4061g00003 823 Pfam Protein tyrosine and serine/threonine kinase 514 779 IPR001245 GO:0004672|GO:0006468
Gabi4061g00003 823 Gene3D Phosphorylase Kinase; domain 1 485 586 - -
Gabi4061g00003 823 FunFam - 587 791 - -
Gabi4061g00003 823 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Gabi4061g00003 823 Gene3D - 22 153 IPR036426 -
Gabi4061g00003 823 Pfam PAN-like domain 346 415 IPR003609 -
Gabi4061g00003 823 SMART blect_4 34 156 IPR001480 -
Gabi4061g00003 823 Pfam S-locus glycoprotein domain 215 325 IPR000858 GO:0048544
Gabi4061g00003 823 CDD PAN_AP_plant 343 430 - -
Gabi4061g00003 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 153 - -
Gabi4061g00003 823 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 586 - -
Gabi4061g00003 823 CDD B_lectin 34 156 IPR001480 -
Gabi4061g00003 823 CDD STKc_IRAK 517 784 - -
Gabi4061g00003 823 SMART ntp_6 350 429 IPR003609 -
Gabi4061g00003 823 Gene3D Hepatocyte Growth Factor 347 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4061g00003 Gabi-Chr4061 37388 41500 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4061g00003 455 796 Receptor kinase-like Gene Family AT4G23230 52.676 2.34e-125 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi4061g00003 PK_Tyr_Ser-Thr 3.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4061g00003 - - gmx:100790261 1137.09