Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4055g00004 ATGGGCCACCGCAGCAGTAGACCCTCTTCCGAAACCCAACCAAGTTCCGACGCCGCTCCCCACCATCGTTCTCACTCCGTCCCCACTTCCAGTTCCCATTCCAGAGTGGGCCGCGTCCTCGGCCGGCCCATGGAGGACGTTCGGTCAACCTACATCTTGGGCCGCGAACTGGGCCGTGGTCAGTTCGGCGTCACCTACCTGGTCACCCACAAAGTCACCAAAGAACAATTTGCCTGTAAATCCATCGCCACACGCAAGCTCATTCACCGCGATGACTTGGACGACGTTCGCCGCGAGGTTCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTCGAGCTCAAGGCAGCTTACGAGGACCGCCACTCCGTTAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATAGCCAAGGGCCATTACTCCGAGCGTGCCGCCGCCGATTTGTGTCGCCAGATCGTGACCGTGGTGCATAATTGTCACACCATGGGAGTGATGCATAGGGATTTGAAGCCTGAGAATTTCTTGTTCCTCAGCAAGGACGAGAATTCGCCTCTTAAGGCAACGGATTTTGGTCTCTCCGTGTTTTTCAAGCTTGGAGATGAATTTAAAGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGACCCCAAGCTGATATTTGGAGTGCCGGAGTTATATTGTACATTCTGCTCTCTGGTGTCCCTCCCTTCTGGGCAGAAAATGAAAAGGGTATCTTTGATGCTATTCTTCTTGGATATGTTGATTTTGCATCAAATCCTTGGCCTTCGATATCGAGTAGTGCTAAAGATCTGGTCAGGAAGATGTTACGAGCTGACCCTAATGAACGGCTTTCAGCAGTTGAAGTCCTTGATCATCCTTGGATGAGAGAAGATGGAGCATCAGATAAGCCTCTTGATATTGCTGTTTTAACTAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAATAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGCCTCCCCAAACTGGGTACTAAGATCTCTGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGACGGAAATGGAACCATTGATTATATTGAGTTTATAACAGCTACCATGCACATGAATAGAATGGAAAAAGAGGACCACCTATATAAAGCTTTTGAATATTTTGACAAGGATAAAAGCGGGTACATAACAATGGAAGAGTTGGAAACTGCCCTCAGAAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGACGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAGCAACCCAGACTTGGTAACCAATAGACGTCGCTAA 1500 0.474 MGHRSSRPSSETQPSSDAAPHHRSHSVPTSSSHSRVGRVLGRPMEDVRSTYILGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLIHRDDLDDVRREVQIMHHLTGHRNIVELKAAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAADLCRQIVTVVHNCHTMGVMHRDLKPENFLFLSKDENSPLKATDFGLSVFFKLGDEFKDLVGSAYYVAPEVLRRSYGPQADIWSAGVILYILLSGVPPFWAENEKGIFDAILLGYVDFASNPWPSISSSAKDLVRKMLRADPNERLSAVEVLDHPWMREDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAADVDGNGTIDYIEFITATMHMNRMEKEDHLYKAFEYFDKDKSGYITMEELETALRKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRNXNPDLVTNRRR 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4055g00004 500 ProSiteProfiles EF-hand calcium-binding domain profile. 423 457 IPR002048 GO:0005509
Gabi4055g00004 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Gabi4055g00004 500 Gene3D Phosphorylase Kinase; domain 1 52 136 - -
Gabi4055g00004 500 SMART efh_1 427 455 IPR002048 GO:0005509
Gabi4055g00004 500 SMART efh_1 355 383 IPR002048 GO:0005509
Gabi4055g00004 500 SMART efh_1 391 419 IPR002048 GO:0005509
Gabi4055g00004 500 SMART efh_1 462 490 IPR002048 GO:0005509
Gabi4055g00004 500 PANTHER SERINE/THREONINE-PROTEIN KINASE 46 483 - -
Gabi4055g00004 500 Pfam Protein kinase domain 53 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4055g00004 500 Gene3D Transferase(Phosphotransferase) domain 1 137 316 - -
Gabi4055g00004 500 FunFam Calcium-dependent protein kinase 1 316 491 - -
Gabi4055g00004 500 SUPERFAMILY EF-hand 347 488 IPR011992 -
Gabi4055g00004 500 SUPERFAMILY Protein kinase-like (PK-like) 48 318 IPR011009 -
Gabi4055g00004 500 CDD STKc_CAMK 51 308 - -
Gabi4055g00004 500 ProSitePatterns Protein kinases ATP-binding region signature. 57 80 IPR017441 GO:0005524
Gabi4055g00004 500 Pfam EF-hand domain pair 356 416 IPR002048 GO:0005509
Gabi4055g00004 500 Pfam EF-hand domain pair 426 488 IPR002048 GO:0005509
Gabi4055g00004 500 ProSitePatterns EF-hand calcium-binding domain. 364 376 IPR018247 -
Gabi4055g00004 500 ProSiteProfiles EF-hand calcium-binding domain profile. 387 422 IPR002048 GO:0005509
Gabi4055g00004 500 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Gabi4055g00004 500 FunFam Calcium-dependent protein kinase 1 53 136 - -
Gabi4055g00004 500 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Gabi4055g00004 500 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Gabi4055g00004 500 ProSiteProfiles Protein kinase domain profile. 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4055g00004 500 Gene3D - 317 492 - -
Gabi4055g00004 500 SMART serkin_6 51 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4055g00004 500 FunFam calcium-dependent protein kinase 1 137 316 - -
Gabi4055g00004 500 ProSiteProfiles EF-hand calcium-binding domain profile. 351 386 IPR002048 GO:0005509
Gabi4055g00004 500 MobiDBLite consensus disorder prediction 6 36 - -
Gabi4055g00004 500 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4055g00004 Gabi-Chr4055 29761 33834 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4055g00004 37 500 EF-hand Containing Proteins AT4G23650 81.075 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi4055g00004 Pkinase 1e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4055g00004 K13412 - gmx:100817321 882.093