Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00008 ATGTTGTTCAATTCTCAGTTCTACAGAGCCCTTGTCCATCTCAAGGCCCCTAAATTTTACCCTCTTTTGTCATTGCCGTTTTCTCTGAAACTGGGATTCTGTACAAGCACTTCAGAATCAGAGTCAGAAACAGAATCACACTCTTTTACGGTTTCCTACCTCATCAACAATATTGGGTTACCCCCAGAAACTGCTGTAAAAGCTTCCAAACGACTTCGTTTCAAGTCCTCAGAGAAACCCGATTCAGTTCTCACCTTCTTCAGAGACCGTGGTTTTTCAGACTCGAACATACGTGACATTGTCAGAAGGGAACCGTGGCTGATTTCGACGGATCCCCACAAAACGATTTTGCCAAAGTTTGAATTTTTTCTCTCCAAAGGTGCTTCTGCCTCTGACATTGCTCGCTTGTTGACAGCGAACCCTAGAATCCTACAAAAAAGCTTGGAGAAACGTATAATCCCTGTCTATGAATTGGTAAATAGATTCTTGCAATCTGACAAGAACACCATTGCTTGCATAATTCGTAACTCGATTTCCTTCTCTTATACTCTGTCCATAGATAATCTCAAATTGTTGATTGATTGTGGAGTTTGTGATTTAAGCATTGCCAGATTGCTTGTCACGCGGCCATCTTTACTTGGCTCAAATGACTTGCTAAAGACTGTGGAGGAAGTAAAGGGTTTGGGATTTGACCCTTCAAAATCAACTTTTGCTGTGGCTATGACAGCAAAGAAAGCTGTTAGTAAAGCCAGGTGGGATGATAAAGTTGATATCTTGAAGAAGTGGGGGTGGTCTGATGAAACTGTTCTTCAAGCATTTAGGAGGCAGCCTAACTTGATGTTGGTATCCTGTGATAAGATTAATTTAGTCATGAGTTTTTGTGTCAATCAGTTGGGTTGGGATGCTTTGGCCCTTGTCAAAAAGCCAGGGTTTTTTGGATATAGTTTGGAGAAAAGGATGGTTCCAAGGGCTTTGGTTCTCCAGAATTTACTCGCTAAAGGCTTGAGAAAAAAGAATGCCAGCTTGTTTACCCCATTTACTATTCCTGAAAAGTTGTTTCTTGAAAAGTATGTGAAATGTTTTAAGGAGGAAAAATATCAACTCTTAAAGTTATACCAGGGAAAAAAAAGAGTATTCAAGAAAACCGGGACGATGGTGCAGTGTAGCATCTAG 1173 0.4066 MLFNSQFYRALVHLKAPKFYPLLSLPFSLKLGFCTSTSESESETESHSFTVSYLINNIGLPPETAVKASKRLRFKSSEKPDSVLTFFRDRGFSDSNIRDIVRREPWLISTDPHKTILPKFEFFLSKGASASDIARLLTANPRILQKSLEKRIIPVYELVNRFLQSDKNTIACIIRNSISFSYTLSIDNLKLLIDCGVCDLSIARLLVTRPSLLGSNDLLKTVEEVKGLGFDPSKSTFAVAMTAKKAVSKARWDDKVDILKKWGWSDETVLQAFRRQPNLMLVSCDKINLVMSFCVNQLGWDALALVKKPGFFGYSLEKRMVPRALVLQNLLAKGLRKKNASLFTPFTIPEKLFLEKYVKCFKEEKYQLLKLYQGKKRVFKKTGTMVQCSI 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00008 390 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 SMART mt_12 98 129 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 SMART mt_12 302 333 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 SMART mt_12 134 165 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 SMART mt_12 203 231 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 Pfam mTERF 248 353 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 Pfam mTERF 84 279 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 Gene3D Transcription termination factor 3, mitochondrial 177 370 IPR038538 -
Gabi4052g00008 390 PANTHER CGI-12 PROTEIN-RELATED 45 363 IPR003690 GO:0003690|GO:0006355
Gabi4052g00008 390 FunFam Mitochondrial transcription termination factor-like 148 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00008 Gabi-Chr4052 61869 65022 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00008 mTERF 1.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00008 K15031 - gmx:102663414 363.614