Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00006 ATGTTCGATTCCCTGCGCTGTAGAGCCCTTGTCCATCTCAAGACCCCAAAATTTTACCCTCTTTTGCCATTGTCGTTTTCTCTGAAACTGAAATTCTCCACTAGCACTTCAGAATCAGAATCAGAATCACACTCTTTCGTGGTGTCCTACCTCATCAACAATGTTGGGTTCCCCCCAGAAACTGCTCTAAAAGCTTCCAAACAACTTCGTTTCAAGACCTCAGAGAAGCCCGATTCAGTTCTCACCTTCTTCAGAGACCGCGGTTTTTCACACTCAAACATATGCCACATCGTCAGAAAGGAACCGTGGCTGCTTTCGTGGGACCCCCACAAAACGATTTTGCCAAAGTTTGTTTTTTTTCTCTCCAAAGGTGCTTCTGCCTCTGACATTGCTCGCTTATTGACAGCGAACCCTAGAATCCTACAAAGAAGCTTGCAGAAACATATTATCCCTCTGTATGAAATGGTTAATAGATTCTTACAATCTGATAAGAACACCATTACTTGCATAATTCGTAACTCAATTTCATTCTCTTATACTCTGACCATACAAAATGTCAAATTGTTGATTGATTATGGTGTTTGTGATTTAAGCATTGCCAGATTACTTATTACGCGGCCATCTTTATTTGGCTCTAATAACTTGCTGAAGACTGTGGAGGAAGTAAAGGGTTTGGGATTTGACCCTTCAAAATCAACTTTTGCTGTGGCATTGTTAGCCATGAAAACTGTTAGTAAAGCCAGGTGGGATGAGAAAGTTGATATCTTGAAGAAGTGGGGGTGGTCTGATGAAATTGTTCTTCAAGCATTTAGGAAGCAACCTAATTTGATGTTGGTATCCGGTGATAAGATTAATTTAGTGATGAGTTTTTGGGTCAATCAGTTGGGTTGGGATGCTTTGGACCTTGCCAGAGGACCTGATATTTTTGGGTATAGTTTTGAGAAAAGGATGGTTCCAAGGGCCTCAGTTCTGCAATTTCTTTTGAGAAAAGGCTTACGAAGTAAGAGTGCAAGCTTACTCATTCCATTTACTATGCCTGAGAAGTCGTTCTTGAGCAAGTTTGTTCACTGTTTTAAGGAGGATGCTTCTTATCTATTGAAGCTGTATGAGGAAAAACTGAATCTTGAATACTCCAGGGAGAAAACTGGCATGCCATTCAGCAAATACTTTTTCTGTCTAGACTAG 1185 0.4068 MFDSLRCRALVHLKTPKFYPLLPLSFSLKLKFSTSTSESESESHSFVVSYLINNVGFPPETALKASKQLRFKTSEKPDSVLTFFRDRGFSHSNICHIVRKEPWLLSWDPHKTILPKFVFFLSKGASASDIARLLTANPRILQRSLQKHIIPLYEMVNRFLQSDKNTITCIIRNSISFSYTLTIQNVKLLIDYGVCDLSIARLLITRPSLFGSNNLLKTVEEVKGLGFDPSKSTFAVALLAMKTVSKARWDEKVDILKKWGWSDEIVLQAFRKQPNLMLVSGDKINLVMSFWVNQLGWDALDLARGPDIFGYSFEKRMVPRASVLQFLLRKGLRSKSASLLIPFTMPEKSFLSKFVHCFKEDASYLLKLYEEKLNLEYSREKTGMPFSKYFFCLD 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00006 394 PANTHER CGI-12 PROTEIN-RELATED 42 359 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 SMART mt_12 200 228 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 FunFam Mitochondrial transcription termination factor-like 145 362 - -
Gabi4052g00006 394 Gene3D Transcription termination factor 3, mitochondrial 174 367 IPR038538 -
Gabi4052g00006 394 Pfam mTERF 81 284 IPR003690 GO:0003690|GO:0006355
Gabi4052g00006 394 Pfam mTERF 245 350 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00006 Gabi-Chr4052 56439 59954 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00006 mTERF 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00006 K15031 - gmx:102667698 370.163