Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00005 ATGAATCTCAATACCATGTTGAAAGCATTTCTCCGTCAGAGTGGTTTAGGCATCTCAAGAAAATCAACAACCCTAAAATTTGACCCTCTTTTGCCGCGCTCACTGTTCCCATTTTCTCTCAAATTCTGCAGCACGAGTTCTTCAGATCAACACGCATTTGCGGTGTCCTACCTCATCAACAATTGTGGGTTCTCACCAGAATCTGCCCTCAAAGCTTCCAAGGTTGTTCGTTTCAAGACCTCACAAAAACCCGATTCAGTTCTCACCTTCTTCAGAAACCACGGTTTCTCAGACTCAGATATATACAGTATCATCAAAAGAGAACCGTGGCTCCTTTCATGCGATACCAACAAAAGGATTTTCCCAAAGTTTCGATTTTTAATCTCCAAAGGCGCTTCTACCTCTGACATTGTTCTCATTGTGACAAGGAACCCCAGATTCCTAGTATTAAGCCTTGAGAATCGTATAATACCAGCATATTATGTGGTAAATAGTATCCTCCAATCTGATAAAATGGTCCTTGCTTCTATAATTTGTTGTCCTTCTTTGCTTTCTAGCAATTGTCTGGTCCCTAATGTCAAATTGTTGGTTGATAATGGTGTGGCCCGTTTCAACCTACTCAGCATCCTTCGTACGAAGCCATATGTAATCTCCTCTACTGATTTGGGGAAGATCGTGCAGGAATTAAGATACCTGGGATTTGATCCTTCCAAATCATACTTTGGTATTGCATTGGTTGCCAAAAGATCTGTAGACAAATCCCGATGGAATGAGAAAATTGATACCTTTAGGAGGTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAGGAGGCAGCCCAAATGTATGTTAACATCCAATGATAAAATCAATAAGGTGATGCAATTTTGGGTCAATCAGTTAGGTTGGAGTTCTTCTTACTTGGTCAAAGGACCTGGGATTTTTGGATATAGTTTGGAGAATTGGGTCATTCCAAGGGCTTTGGTTATCCAGTATCTTCTATCCAAAGGTTTGATAAGCAGCAGTGCCAGCTTAGTTACACCGTTTATTATGTCTGAGAAATTGTTCCTGAAAAGGTTTGTTGAATATTTTGGAAAGGAGGAAACTTCACAGCTATTAAAGTTATATCAGAGAAAAATGAAAGATGAAGATAAGAGAGTACAGAGGGAACCGTGA 1179 0.4003 MNLNTMLKAFLRQSGLGISRKSTTLKFDPLLPRSLFPFSLKFCSTSSSDQHAFAVSYLINNCGFSPESALKASKVVRFKTSQKPDSVLTFFRNHGFSDSDIYSIIKREPWLLSCDTNKRIFPKFRFLISKGASTSDIVLIVTRNPRFLVLSLENRIIPAYYVVNSILQSDKMVLASIICCPSLLSSNCLVPNVKLLVDNGVARFNLLSILRTKPYVISSTDLGKIVQELRYLGFDPSKSYFGIALVAKRSVDKSRWNEKIDTFRRWGWSEETILEAFRRQPKCMLTSNDKINKVMQFWVNQLGWSSSYLVKGPGIFGYSLENWVIPRALVIQYLLSKGLISSSASLVTPFIMSEKLFLKRFVEYFGKEETSQLLKLYQRKMKDEDKRVQREP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00005 392 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 SMART mt_12 174 202 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 Gene3D Transcription termination factor 3, mitochondrial 65 183 IPR038538 -
Gabi4052g00005 392 Gene3D Transcription termination factor 3, mitochondrial 184 368 IPR038538 -
Gabi4052g00005 392 FunFam Mitochondrial transcription termination factor-like 152 368 - -
Gabi4052g00005 392 Pfam mTERF 88 217 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 Pfam mTERF 251 357 IPR003690 GO:0003690|GO:0006355
Gabi4052g00005 392 Coils Coil 367 387 - -
Gabi4052g00005 392 PANTHER CGI-12 PROTEIN-RELATED 50 364 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00005 Gabi-Chr4052 44651 46308 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00005 mTERF 4.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00005 K15031 - gmx:102667698 386.341