Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00004 ATGAATCTCAATATCATGTTGAAAGCATTTCTCCGTCAGAGTGGTTTAGGCATCTCAAGAAAATCAACAACCCTAAAATTTGACCCTCTTTTGCCGCGCTTGCTGTTCCCATTTTCTCTCAAATTCTGCAGCACAAGCACTTCAGATCAACACTCATTTGCGGTGTCCTACCTCATCAACAATTGTGGGTTCTCACCAGAATCTGCCCTCAAAGCTTCCAAGGTTGTTCGTTTCAAGACGTCAGAAAAACCCGATTCAGTTCTCACCTTCTTCAGAAACCACGGTTTCTCAGACTCAGATATTTACAATATCATCAAAAGAGAACCGTGGCTCCTTTCATGTGATACAAACAAAAGGGTTTTGCCAAAGTTTCAATTTTTACTCTCCAAAGGCGCTTCTACCTCTGACATTGTTCGCATTGCGACAGGGAGCCCCAGATTCCTAAAATTAAGCTTGGAGAATCATATGATTCCAGCATATAATTTGGTAAATAGATTCCTCCTATGTGATAAAAAGGTCATTGCTTCTGTTATTTGTTGTCCTTCTTTGCTTTCAAGCAATTATCTGGTCCCTAATGTCAAATTGTTGGTTGATAATGGTGTGGCCCGCTCCAACCTTTTCAGAATCCTTCGTGTGAAGCCTTATGTAATCTCCTCTACTGATTTGGGGAAGATGGTGCAGGAATTAAAAAAACTGGGATTTGATCCTTCCAAAACATACTTTGGTGATGCACTGATTGCCAAAAGGTCTATGAGTAAATCCAAGTGGAATGAGAAAATTGATAGTTATAAGAAGTGGGGATGGTCTGAAGAAACAATTTTGGAAGCATTTAGGAGACAGCCCAACTGTATGATAGCATCAAATGACAAAATCAATAGGGTGATGCGATTTTGGGTTAATCAGTTAGGTTGGAGTTCTTCTTACTTGATCAAAGGACCTGGGATTTTTGCATATAGTTTGGAGAATAGGGTCATTCCAAGGGCTTCGGTTGTTCAGTATCTTCTATCCAAGGGTTTGAGAAGCGAGGGTGCCAGCTTTCTTACACCGTTTTTTATGTCTGAGAAATTGTTCCTGCGAAGGTTTGTTAAATGTTTTGGAGAGGAGGAAACTTCACAGCTATTAAAGCTGTATCAGGGAAAAATGAACGTTGAAGATAAGAGGGCACAGGGGGAACCGTGA 1179 0.4063 MNLNIMLKAFLRQSGLGISRKSTTLKFDPLLPRLLFPFSLKFCSTSTSDQHSFAVSYLINNCGFSPESALKASKVVRFKTSEKPDSVLTFFRNHGFSDSDIYNIIKREPWLLSCDTNKRVLPKFQFLLSKGASTSDIVRIATGSPRFLKLSLENHMIPAYNLVNRFLLCDKKVIASVICCPSLLSSNYLVPNVKLLVDNGVARSNLFRILRVKPYVISSTDLGKMVQELKKLGFDPSKTYFGDALIAKRSMSKSKWNEKIDSYKKWGWSEETILEAFRRQPNCMIASNDKINRVMRFWVNQLGWSSSYLIKGPGIFAYSLENRVIPRASVVQYLLSKGLRSEGASFLTPFFMSEKLFLRRFVKCFGEEETSQLLKLYQGKMNVEDKRAQGEP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00004 392 PANTHER CGI-12 PROTEIN-RELATED 49 365 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 SMART mt_12 138 169 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 SMART mt_12 306 340 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 SMART mt_12 102 133 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 SMART mt_12 174 202 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 SMART mt_12 274 305 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 SMART mt_12 207 235 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 Pfam mTERF 251 348 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 Pfam mTERF 88 235 IPR003690 GO:0003690|GO:0006355
Gabi4052g00004 392 Gene3D Transcription termination factor 3, mitochondrial 50 184 IPR038538 -
Gabi4052g00004 392 Gene3D Transcription termination factor 3, mitochondrial 185 370 IPR038538 -
Gabi4052g00004 392 FunFam Mitochondrial transcription termination factor-like 152 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00004 Gabi-Chr4052 40585 41924 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00004 mTERF 7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00004 K15031 - gmx:102667698 387.882