Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00003 ATGTTGAAAGCATTTCTCCGTCAGAAAGGTTTTAGAATATCAAAAACCCTAAAATTTGACCCTCCTTTGTCGCACTCGCTGTTCCCATTTTCTCTCAAATTCTGCAGCACAAGCACTTCAGATCCACACTCATTTGCGGTGTCCTACCTCATCAACAATTGTGGGTTCTCACAAGAATCTGCTCTCAAAGTTTCCAAGCATGTTCATTTCAAGACCTCACAAAAGCCCGATTCAGTTCTCACCTTGTTCAGAAACTACGGTTTCTCTGACTCAGATATACACAACATCGTCAAAAGAGAACCGTGGCTCCTTTCGTGCAATACCAACAAAAGGGTTTTGCCAAAGTTTCAATTTTTACTCTCCAGAGACGCTTCTACCTCTGACATTGTTCGCATTGTGACTGGGAACCCCAGATTCCTAAAATTAAGTTTTGAGAATCGTATAATCCCAGCATATAGTTTGGTAAATAGATTCCTCCAATCTGATAAAAGGGCCATTGCTTCTATAATTTGTTGTCCTTCTTTGCTTTCTGGCACTTGTCTGGTCCCTAATGTCAAATTGCTGGTTGATAATGGTGTGGCCCATTCCAACCTTTACAGAATCCTTCGTGTGAATCCTTATGTAATCTCCTCTACTGATTTGGGGAAGATGGTACAGGAATTAAGAAACCTGGGATTTGATCCTTCCAAATCATACTTTGGTGTTGCATTGCTTGCCAAAATATCTGTAGGCAAATCCCAATGGAATGAGAAAATTGATACCTTTAAGAGGTGGGGTTGGTCTGAGGAAACAATTTTGGAAGCATTTAGGAGGCAGCCCAACTGTATGTTAACATCCAATGATAAAATCAATAGGGTGATGCAATTTTGGGTCAATCAGTTAGGTTGGAGTTCTTCTTACTTGGTCAAAGGACCTGGTATTTTTGGATATAGTTTGGAAAATTGGGTCATTCCAAGGGCTTTGGTTGTCCAGTATCTTCTATCCAAAGGTTTGATAAGCAGCAGTGCCAGCTTAGTTACTCCGTTTGTTATGTCTGAGAAATTGTTCCTGAAAAGGTTTGTTGAATATTTTGGAAAGGAGGAAACTTCACAGCTATTAAAGCTATATCAGAGAAAAATGAAAGATGAAGATAAGAGAGCATAG 1143 0.3981 MLKAFLRQKGFRISKTLKFDPPLSHSLFPFSLKFCSTSTSDPHSFAVSYLINNCGFSQESALKVSKHVHFKTSQKPDSVLTLFRNYGFSDSDIHNIVKREPWLLSCNTNKRVLPKFQFLLSRDASTSDIVRIVTGNPRFLKLSFENRIIPAYSLVNRFLQSDKRAIASIICCPSLLSGTCLVPNVKLLVDNGVAHSNLYRILRVNPYVISSTDLGKMVQELRNLGFDPSKSYFGVALLAKISVGKSQWNEKIDTFKRWGWSEETILEAFRRQPNCMLTSNDKINRVMQFWVNQLGWSSSYLVKGPGIFGYSLENWVIPRALVVQYLLSKGLISSSASLVTPFVMSEKLFLKRFVEYFGKEETSQLLKLYQRKMKDEDKRA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00003 380 Pfam mTERF 80 226 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 Pfam mTERF 243 349 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 PANTHER CGI-12 PROTEIN-RELATED 42 356 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 SMART mt_12 199 227 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 SMART mt_12 166 194 IPR003690 GO:0003690|GO:0006355
Gabi4052g00003 380 Gene3D Transcription termination factor 3, mitochondrial 50 179 IPR038538 -
Gabi4052g00003 380 Gene3D Transcription termination factor 3, mitochondrial 180 360 IPR038538 -
Gabi4052g00003 380 FunFam Mitochondrial transcription termination factor-like 144 360 - -
Gabi4052g00003 380 Coils Coil 359 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00003 Gabi-Chr4052 37390 38532 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00003 mTERF 5.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00003 K15031 - gmx:102667698 395.201