Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00002 ATGTTGAAAGCGTTTCTCCGTCAGAAAGCTTTTGGTGTCTCTAGAATATCAACAACCCTAAAATTTGCCCCTTTTTTGCCGCACTCGCTGTTCCCATCTTCTCTCAAATTCTGCAGCACAAGCACTTCAGATCAACACTCATTTGCGGTGTCCTACCTCATCCACAATTGTGGGTTCTCACCAGAATCTGCTCTCAAAGCTTCCAAGCGTGTTCGTTTCAAGACCTCACAAAAACCCGATTCAGTTCTCAACTTCTTCAGAAACCACGGTTTCTCAGACTCAGTTATATACAATATCATCAAAAGAGAACCGTGGCTCCTTTCATGCGATACCAACACAAGGATTTTGCCAAAGTTTCGATTTTTACTCTCCAAAGGCGCTTCTACCTCTGACATTGTTCTCATTGTGACAAGGAACCCCAGATTCCTACAATTAAGCTTTGAGAATTGTATAATCCCAGCATATAATTTGGTAAATAGATTCCTTCTATCTGATGAAAAGACCATTGCTTCTCTAATTCATTGTCCTTCTTTGCTTTATCGCAATTTTTCAGCCCTTAATATCAAATTATTAGTTGATTATGGTGTGGCCAGTTCCATGATTTTCAGAATCCTTCGTAACAGTCCTCATGTAATCGGCAGTAGTGACTTGGTGAAGACGATGCAGGAATTAACAAACCTGGGATTTGATCCTTCCAAATCATACTTTGGTATTGCACTGATTGCCAAAAGATCTGTAAACAAATCCCAATGGAATGAGAAAATTGATACCTTTAAGAGGTGGGGTTGGTCTGAAGAAACAATTTTGGAAGCATTTAGGAGGCAGCCCAACTGTATGTTAACATCGAATGATAAAATCAATAGAGTGATGCAATTTTGGGTCAATCAGTTAGGTTGGAGTTCTTCTTACTTGGTCAAAGGACCTGGTATTTTTGGATATAGTTTGGAGAATAGGGTCATTCCAAGGGCTTTGGTTATCCATTATCTTCTATCCAAAGGTTTGATAAGCAGCAGTGCCAGCTTAGTTACACCGTTTATTATGTCTGAGAAATTGTTCCTGAAAAGGTTTGTTGAATATTTTGGAAAGGAGGAAACTTCACAGCTATTAAAGTTATATCAGAGAAAAATGAAAGATGAAGATAAGAGAGTACAGAGGGAACCGTGA 1164 0.3909 MLKAFLRQKAFGVSRISTTLKFAPFLPHSLFPSSLKFCSTSTSDQHSFAVSYLIHNCGFSPESALKASKRVRFKTSQKPDSVLNFFRNHGFSDSVIYNIIKREPWLLSCDTNTRILPKFRFLLSKGASTSDIVLIVTRNPRFLQLSFENCIIPAYNLVNRFLLSDEKTIASLIHCPSLLYRNFSALNIKLLVDYGVASSMIFRILRNSPHVIGSSDLVKTMQELTNLGFDPSKSYFGIALIAKRSVNKSQWNEKIDTFKRWGWSEETILEAFRRQPNCMLTSNDKINRVMQFWVNQLGWSSSYLVKGPGIFGYSLENRVIPRALVIHYLLSKGLISSSASLVTPFIMSEKLFLKRFVEYFGKEETSQLLKLYQRKMKDEDKRVQREP 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00002 387 FunFam Mitochondrial transcription termination factor-like 147 363 - -
Gabi4052g00002 387 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 Coils Coil 362 382 - -
Gabi4052g00002 387 Gene3D Transcription termination factor 3, mitochondrial 185 363 IPR038538 -
Gabi4052g00002 387 Pfam mTERF 83 223 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 Pfam mTERF 246 352 IPR003690 GO:0003690|GO:0006355
Gabi4052g00002 387 PANTHER CGI-12 PROTEIN-RELATED 44 359 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00002 Gabi-Chr4052 27880 29170 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00002 mTERF 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00002 K15031 - gmx:102667698 383.259