Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4052g00001 ATGTTGAAAGCGTTTCTCCGTCAAAAAGGTTTTGGTATCTCTAGATTATCAACAACCCTAAAATTTGCCCCTCTTTTGCCGCACTCGCTGTTCCCATTTTCTCTCAAAATCTGCAGCACGAGCGCTTCAGATCAACACTCATTTGCGGTGTCCTACCTCATCAACAATTGTGGGTTCTCACCAGAATCTGCTCTCAAAGCTTCCAAGCGTGTTCGTTTCAAGACCTCACATAAACCCGATTCAGTTCTCACCTTCTTCAGAAACCACGGTTTCTCAGACTCAGTTATATACAATATCATCAAAAGAGAACCGTGGCTCCTTTCATGCAATACCAACGAAAGGGTTTTGCCAAAGTTTCGATTTTTACTCTCCAAAGGCGCGTCTACCTCTGACATTGTTCTCATTGTGACAAAGAACCCCAGATTCCTACAATTAAGCTTTGAGAATTGTATAATCCCAGCATATAATTTGGTAAATAGATTCCTTCTATCTGATGAAAAGACCATTGCTTCTATAATTTATTGTCCTTCTTTGCTTTATAGCAATATTCCAGCCCTTAATATCAAATTATTCGTTGATTATGGTGTGGCCAGTTGCAACATTTTCAGAATCCTTCGTCAGAATCCTCATATAATCTGCAGAAGTGATTTGCTGAAGACGGTGCAGGAATTGACAAACCTGGGATTTGATCCTTCCAAAACACACTTTGGTGTTGCACTGATTGCCAAAAGATCTATAAGCAAATCCCAGTGGAATGATAAAATTGATACCTACAAGAGCTGGGGGTGGTCTGAAGAAACAGTTTTGGAAGCATTTAGGAGGCAGCCCAACTGTATGTTAATATCCAATGATAAAATCAATAGGGTGATGAGATTTTGGGTTAATCATTTAGGTTGGAGTAGTTCTTACTTGGTCAAAGGACCTGGGATTTTTGGCTATAGTTTGGAGAATAGGGTTATTCCAAGAGCTTCGGTTGTCCAGTATCTTCTATCCAAAGGTTTGAGAAGCGAGAGTGCCAGCTTACTTACACCTTTTTTTGTTTCTGAGAAGTTGTTCTTGCAAAAATTTGTTGAATGCTTTGGGGAGGAGGAAACTTCGCAGCTATTAAAGCTATATCTGAGAAAGATGAAGGATGAGGGCCAAAAGTTTGGGGAATTTTTTTAA 1164 0.3978 MLKAFLRQKGFGISRLSTTLKFAPLLPHSLFPFSLKICSTSASDQHSFAVSYLINNCGFSPESALKASKRVRFKTSHKPDSVLTFFRNHGFSDSVIYNIIKREPWLLSCNTNERVLPKFRFLLSKGASTSDIVLIVTKNPRFLQLSFENCIIPAYNLVNRFLLSDEKTIASIIYCPSLLYSNIPALNIKLFVDYGVASCNIFRILRQNPHIICRSDLLKTVQELTNLGFDPSKTHFGVALIAKRSISKSQWNDKIDTYKSWGWSEETVLEAFRRQPNCMLISNDKINRVMRFWVNHLGWSSSYLVKGPGIFGYSLENRVIPRASVVQYLLSKGLRSESASLLTPFFVSEKLFLQKFVECFGEEETSQLLKLYLRKMKDEGQKFGEFF 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4052g00001 387 Gene3D Transcription termination factor 3, mitochondrial 186 364 IPR038538 -
Gabi4052g00001 387 Gene3D Transcription termination factor 3, mitochondrial 55 185 IPR038538 -
Gabi4052g00001 387 FunFam Mitochondrial transcription termination factor-like 147 364 - -
Gabi4052g00001 387 PANTHER CGI-12 PROTEIN-RELATED 44 360 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 Pfam mTERF 188 352 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 Pfam mTERF 83 230 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Gabi4052g00001 387 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4052g00001 Gabi-Chr4052 12263 13426 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gabi4052g00001 mTERF 5.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4052g00001 K15031 - gmx:102667698 360.147