Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4047g00001 ATGGATTTGTTTGAGCCAGATGGAAATGGGAAGGAGGAGTTGTTTGAGCCAGATGGAAATGGGAAGGAGGAGTTGTTTGAGCCAGATGGAAATGGGAAGGAGGAGTCTTTGCCACCACCGCCTCCCATTGTCCCCTCAGATGTTGTACCAGTCAAAGCAGAAGAGGTGCTCGCTGCCCCTGCTGAACCTGTCAAGAAAAAGGTTTCCCGTGTTCCAATAGCCAGACGAGGCTTGGGATCAAAAGGAACGAAGATATCTCTTCAAACCAATCACTTCAAAGTTAATGTCACTAACAATGATGGACATTTCTTCCATTATAGTGTGTCTTTTTCTTATGAAGATGGACGTCCTGTAGAAGGTAAGGGGGTAGGGAGAAAAATAATGGACAGGGTGCAGGAGACATATGGTTCTGAATTAAATGGTAAGGACTTTGCTTACGATGGCGAGAAAAGTCTGTTTACAATTGGCTCTCTTCCTAGAAACAAGTTTGAGTTTGAAGTTGTTTTAGAGGATGTCACATCTAACAGAAATAATGGCAATTGTAGCCCTGATGGTCATGGCGACAATGAGAGTGACAAAAAGAGGATGCGGCGCCCATACCGTGCAAAGACATTTAAAGTAGAGATTAGCTTTGCCGCAAAAATTCCAATGCAAGCCATAGCCAATGCCTTACGTGGGCAGGAATCAGAGAATTTTCAAGAAGCCATTAGAGTGCTCGATATCATATTGAGGCAACATGCTGCTAAGCAAGGCTGTCTACTTGTACGTCAATCTTTCTTCCACAATAATCCGATGAATTTTGCTGATGTTGGAGGTGGTGTTCTGGGCTGTAGAGGATTCCATTCAAGTTTTAGAACTACACAGGGTGGCCTGTCCCTCAACATAGATGTCTCAACTACCATGATTATTCAACCTGGGCCTGTGGTGGACTTCTTAATTGCCAATCAAAATGTGAGAGATCCCTTTCAACTTGACTGGGCAAAGGCCAAAAGGGCACTCAAAAACCTGAGGATTAAAACCGGCCCATCGAATCAAGAGTACAGAATTACTGGACTCAGTGAACTCCCATGCAGAGAACAGACTTTTACTCTGAAGAACAAAGGTGGAAGGGATGGTGATGATGGTGATGAGGAAGTGACTGTTTTTGATTATTTTATTAATGTTCGTAAGATGGATCTTCGCTATTCTGCTGATCTTCCATGTATCAATGTTGGCAAACCAAAACGGCCAACATATTTCCCCATTGAGCTTTGTGAATTGTTATCCTTGCAACGTTATACGAAAGCTCTGTCCATAAATCAAAGGACTTCACTAGTGGAGAGGTCCAGGCAGAAGCCACAAGAGAGGATGAAAGTTTTGTCTGAAGCACTAAAAACCAGCAACTATGGTTCTGAACCTATGCTTCGTAATTGTGGAATTTCTATTAGCACTGGCTTTACTCAAGTGGAGGGTCGTGTTTTGCCTGCTCCAAAGTTGAAGTTTGGCAATGGTGAGGATTTCAATCCAAGGAATGGAAGATGGAATTTTAACAATAAGAAATTTGTGCAGCCAACAAAAGTACAACGATGGGCTGTGGCTAACTTTTCGGCACGCTGTGATGCACAAGGGCTTGTGAGGGATTTAATTAGAATTGGAGAAATGAAAGGAATTCTGATAGAACCCCCATTTGATGTGTTTGAAGAGAATGGTCAGTTTAGGCGTGCACCACCTATGGTTAGAGTGGATAAGATGTTTGAGACCATCGAGTCTAAACTTCCTGGAGCTCCTGAGTTCCTTCTCTGCTTGCTTCCTGATCGGAAAAATTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGACTATGGAATTGTTAATCAGTGCATGTGTCCTACAAGGGTCAATGACAATTATTTGACTAATCTTTTGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCATTGTTAGGCGTCGAGCATTCTCCTTCTCTTCCTGTTGTTTCCAAAGCTCCCACCCTTATTCTAGGCATGGATGTGTCTCATGGCTCGCCAGGCCAGTCTGATATTCCTTCAATTGCTGCGGTGGTCAGCTCTAGACAGTGGCCTCTGATATCAAAGTATAGGGCATCTGTTCGAACCCAGTCTGCAAAGGTTGAAATGATAGATAATTTGTTCAAGCAAGTGTCTGAAAAGGATGACGAAGGCATCATGAGGGAACTTTTGGTTGATTTCTATGTAAGTTCTGGGAAGAGAAAACCGGATAATATAATCATATTCAGGGATGGTGTTAGTGAGTCGCAGTTCAATCAAGTATTGAATATCGAACTTGATCAAATCGTTGAGGCATGTAAATTTCTTGATGAAAAGTGGACACCGAAATTTGTGGTAATTGTTGCTCAGAAGAACCACCACACAAGATTCTTCCAGTCTGGCTCTCCTGACAATGTCCCACCTGGAACTTTGATCGACAATAGAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGTACCAGTAGGCCTACACACTACCATGTGCTGTTAGATGAGGTTGGTTTCTCATGTGATGAACTACAAGAGCTTGTCCATAATCTATCATACGTGTATCAGAGAAGCACCACTGCCATTTCTGTTGTTGCTCCAATATGCTATGCACATTTGGCTGCAACTCAGTTGGGGCAGTTCATGAAATTTGAGGACAAATCTGAGACATCTTCAAGCCATGGTGGACTAAGTGCTGCTGGAGCTGTCCCTGTACCCCAACTGCCCAAACTGCAGGAAAAAGTCTGCAACTCAATGTTCTTTTGTTGA 2817 0.4281 MDLFEPDGNGKEELFEPDGNGKEELFEPDGNGKEESLPPPPPIVPSDVVPVKAEEVLAAPAEPVKKKVSRVPIARRGLGSKGTKISLQTNHFKVNVTNNDGHFFHYSVSFSYEDGRPVEGKGVGRKIMDRVQETYGSELNGKDFAYDGEKSLFTIGSLPRNKFEFEVVLEDVTSNRNNGNCSPDGHGDNESDKKRMRRPYRAKTFKVEISFAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNNPMNFADVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFQLDWAKAKRALKNLRIKTGPSNQEYRITGLSELPCREQTFTLKNKGGRDGDDGDEEVTVFDYFINVRKMDLRYSADLPCINVGKPKRPTYFPIELCELLSLQRYTKALSINQRTSLVERSRQKPQERMKVLSEALKTSNYGSEPMLRNCGISISTGFTQVEGRVLPAPKLKFGNGEDFNPRNGRWNFNNKKFVQPTKVQRWAVANFSARCDAQGLVRDLIRIGEMKGILIEPPFDVFEENGQFRRAPPMVRVDKMFETIESKLPGAPEFLLCLLPDRKNCEIYGPWKKKNLADYGIVNQCMCPTRVNDNYLTNLLLKINAKLGGLNSLLGVEHSPSLPVVSKAPTLILGMDVSHGSPGQSDIPSIAAVVSSRQWPLISKYRASVRTQSAKVEMIDNLFKQVSEKDDEGIMRELLVDFYVSSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIVEACKFLDEKWTPKFVVIVAQKNHHTRFFQSGSPDNVPPGTLIDNRICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEVGFSCDELQELVHNLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQEKVCNSMFFC 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4047g00001 938 ProSiteProfiles Piwi domain profile. 591 899 IPR003165 GO:0003676
Gabi4047g00001 938 Pfam Argonaute linker 2 domain 448 494 IPR032472 -
Gabi4047g00001 938 CDD PAZ_argonaute_like 305 421 - -
Gabi4047g00001 938 Gene3D - 486 652 - -
Gabi4047g00001 938 Gene3D - 658 938 IPR036397 GO:0003676
Gabi4047g00001 938 Pfam Piwi domain 592 899 IPR003165 GO:0003676
Gabi4047g00001 938 MobiDBLite consensus disorder prediction 1 46 - -
Gabi4047g00001 938 ProSiteProfiles PAZ domain profile. 341 422 IPR003100 GO:0005515
Gabi4047g00001 938 Pfam Mid domain of argonaute 501 543 IPR032473 -
Gabi4047g00001 938 FunFam Protein argonaute 7 300 426 - -
Gabi4047g00001 938 Pfam Argonaute linker 1 domain 255 303 IPR014811 -
Gabi4047g00001 938 SMART Piwi_a_2 591 899 IPR003165 GO:0003676
Gabi4047g00001 938 MobiDBLite consensus disorder prediction 1 31 - -
Gabi4047g00001 938 SUPERFAMILY Ribonuclease H-like 575 897 IPR012337 -
Gabi4047g00001 938 Gene3D paz domain 299 426 - -
Gabi4047g00001 938 SUPERFAMILY PAZ domain 300 462 IPR036085 GO:0005515
Gabi4047g00001 938 CDD Piwi_ago-like 466 893 IPR045246 -
Gabi4047g00001 938 MobiDBLite consensus disorder prediction 176 197 - -
Gabi4047g00001 938 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 64 901 - -
Gabi4047g00001 938 FunFam Protein argonaute 3 659 938 - -
Gabi4047g00001 938 Pfam N-terminal domain of argonaute 83 243 IPR032474 -
Gabi4047g00001 938 SMART DUF1785_2 253 305 IPR014811 -
Gabi4047g00001 938 Pfam PAZ domain 309 438 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4047g00001 Gabi-Chr4047 33260 44150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4047g00001 75 938 Eukaryotic Initiation Factors Gene Family AT5G43810 36.000 2.10e-167 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4047g00001 K11593 - gmx:100820376 1609.73