Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4046g00041 ATGGAAGAAGATCAAGAACTCAAACACGCGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTGGGAGGTCACATGAGGTCTCACGTGATCAATGTTTCAGCTGAGACAGAGGAGAAGTTTGCAACAACGAGGAATCTTTCATCTCTTAACAACAACAATGATGGAGATCACATAGTAAGAGAAGGTTCTGAAGCAGGAACAAATAATGCTGGTTATGGTCTCAGAGAAAACCCCAAGAAAACTTGGAGACTCACAGATTCAAGTGAAGAGACTTTTGTGTTGGACAAGTTCTGCAAAGAGTGTGGTAAAGGGTTTCACTCTTGGAAAGCTTTGTTTGGTCACATGAAGTGCCATTCCGAGAAAGAAAGAGTATCCAATAACAGCTTCGGTGATCAAGATTCATGGACTAAAAATGCTAGCCAATCTGACAATGAAGCCACTGCTCCAAACCGAAGGAAAAGATCCAAGAGAAGAACAAGGTACATGACCCCATCAACTTCTTCTTTGTCCTTTGCTACCAATCCTTCATCTTCTGTTTCTGAGGCTGAGCATGAACAAGAAGAGGTTGCTATGAGCTTGATGATGCTTAGCAGGGATTTGGGTCCTTGGGGTGGTTTGAATTTTGTTGTTGAGTCCTCTCACAATAACTCTTTGCACTTGGAAGCTTCATCTTCTCTTCCCACTAATAACATGGTTTCTAAGATTGATGGCAAGAGGCTTCGCAATTTGGTTTCTTCAAATCTCAACTCCAAAGGTAAAAGTTCAGAACTTTTGGCAACTGAGAGTCCTAGGATGAAGAAAACAAGAGTTTCCATTAATGGGTTCATCAAGAATGGAAAGGATAAGAATTTTGAGATCGATTCTCAGCCTGCATTTGATGCCAATGGAACAGAATTAGTTCTGTCAAACTCGGCTACTAGTAACAAGTACACTCCAATCAAGGCAAAGCTTTTGGATTCTGAATCCAAATCAAGTTCTTTGAAGAATTGTGTAAGAAAGCCTTCAGAAGCTGAATTCAGCAAGAACTCTCATAAGAGAGGCAAGTTCGAGTGTACTACTTGCAACAAAATCTTCCACTCCTACCAAGCTCTTGGAGGCCATAGAGCTAGTCATAAGAAGATCAAAGGTTGCTTTGCTTCAAGAAGTGAAAACAGCATTGAATTTGAAGCAGACCTCTCCCCTGACCCAACAACAACAGAAAGCAAGATCATGAAGAACAACAACATCAATGAATATATGGAAGAACATGAAGTGGCTAGAGAGTCCAAGAAGAACAAAGGGCATGAGTGCCCAATTTGCCTCATGGTTTTTCCATCAGGGCAAGCCTTGGGTGGCCACAAAAGATCTCATTTGGCTGGTGGGTCTGAGAGTAGAAACTTTCAAAGTCAAACACTTGTACTTCAGGAATCAGTCCCAGAAATTAGGGAATTCCTTGATCTTAATTTTCCTGCTACTACAGATGATGAAACCAATAGCAATGTCACCGAGCCTTACAGAACCTGGTGGGCACTTGGAGGTAACCACAAGCAGGAGGAGGCACTCGTTGGCCTCATGTCTAACTAA 1572 0.4218 MEEDQELKHACKFCSKSFPCGRSLGGHMRSHVINVSAETEEKFATTRNLSSLNNNNDGDHIVREGSEAGTNNAGYGLRENPKKTWRLTDSSEETFVLDKFCKECGKGFHSWKALFGHMKCHSEKERVSNNSFGDQDSWTKNASQSDNEATAPNRRKRSKRRTRYMTPSTSSLSFATNPSSSVSEAEHEQEEVAMSLMMLSRDLGPWGGLNFVVESSHNNSLHLEASSSLPTNNMVSKIDGKRLRNLVSSNLNSKGKSSELLATESPRMKKTRVSINGFIKNGKDKNFEIDSQPAFDANGTELVLSNSATSNKYTPIKAKLLDSESKSSSLKNCVRKPSEAEFSKNSHKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRSENSIEFEADLSPDPTTTESKIMKNNNINEYMEEHEVARESKKNKGHECPICLMVFPSGQALGGHKRSHLAGGSESRNFQSQTLVLQESVPEIREFLDLNFPATTDDETNSNVTEPYRTWWALGGNHKQEEALVGLMSN 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4046g00041 523 ProSitePatterns Zinc finger C2H2 type domain signature. 433 453 IPR013087 -
Gabi4046g00041 523 SUPERFAMILY beta-beta-alpha zinc fingers 100 374 IPR036236 -
Gabi4046g00041 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Gabi4046g00041 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Gabi4046g00041 523 Pfam C2H2-type zinc finger 9 31 - -
Gabi4046g00041 523 Pfam C2H2-type zinc finger 431 455 - -
Gabi4046g00041 523 Pfam C2H2-type zinc finger 101 123 - -
Gabi4046g00041 523 Pfam C2H2-type zinc finger 352 376 - -
Gabi4046g00041 523 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 505 - -
Gabi4046g00041 523 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Gabi4046g00041 523 SMART c2h2final6 352 374 IPR013087 -
Gabi4046g00041 523 SMART c2h2final6 99 121 IPR013087 -
Gabi4046g00041 523 SMART c2h2final6 9 31 IPR013087 -
Gabi4046g00041 523 SMART c2h2final6 431 453 IPR013087 -
Gabi4046g00041 523 MobiDBLite consensus disorder prediction 164 183 - -
Gabi4046g00041 523 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Gabi4046g00041 523 MobiDBLite consensus disorder prediction 131 149 - -
Gabi4046g00041 523 SUPERFAMILY beta-beta-alpha zinc fingers 6 32 IPR036236 -
Gabi4046g00041 523 ProSitePatterns Zinc finger C2H2 type domain signature. 354 374 IPR013087 -
Gabi4046g00041 523 Gene3D Classic Zinc Finger 349 453 - -
Gabi4046g00041 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 352 379 IPR013087 -
Gabi4046g00041 523 Gene3D Classic Zinc Finger 1 126 - -
Gabi4046g00041 523 MobiDBLite consensus disorder prediction 127 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4046g00041 Gabi-Chr4046 598600 600171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4046g00041 1 491 C2H2 Transcription Factor Family AT1G26610 32.495 1.05e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4046g00041 zf-C2H2_6 1.8e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4046g00041 - - aprc:113852386 656.366