Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4046g00003 ATGGAAAAGCACAAATGCAAGCTTTGTTCAAGAACATTTGCCAATGGCAGAGCCCTCGGTGGACACATGAAGGCTCATCTTGCCACCTTACCCCTTCCTCCAAAACCTGAACCATTCACTGAGTCTCTTGTTTCCTTGTCATATTTTTCTTCTTCTCCTGAAGAAGAAGAAGAAGAAGAAAAGGCTCTGATTTACGGTTTGAGGGAGAATCCCAAGAAAAGTTTCAGGCTTGCAGATCCTGAGTTCTCTTTTGCACCTGATACTGGTTCTGTGGTCCAAGACAGAGAGAGTGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAACGGAACCGCAAGTCCAGCTTTGTGGTTAGCCACACCCAGAATTTGGAACCGCCCAAGAACCCCAAGATGAGTTTCATTGTGTCACTATCAACACAACCCACCGAGCCTGAACCTATGAGCTCGGTTTCTAACACTTCCCCTGAAGAAGATGTTGCCATGTGCCTCATGATGCTGTCGAGGGACAAGTGGAGGAAGAACAATGTGGTGGAACATGTTCAAGAACAAGAAGAACAAGGGAAAATATCATTAAATGGATGCAACAAAGAGATCAAGTTTAAGAGAGTTCGTGGGAAGCACATGTGTGACAATTGTGGGAAAGTGTTTCGATCTTCTCGAGCATTGGGCAGTCACAGAAGTATTTGCAGAGGTGAAGGGAATAATGACAAGATTTTTGAATGCCCCTTTTGTCATAAGGTTTTTGGGTCAGGTCAAGCACTTGGTGGCCATAAGAGATCTCACCTCATGCCATCTTCTTCATCAACTGCTAATGATTGTGTTAGATTGAAAGAGAGTTTCATAGATCTCAACTTGCCAGCACCTGAAGAAGAAGACAACCTTAGTGTTGTTTCTGATGCCTAA 909 0.4444 MEKHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPFTESLVSLSYFSSSPEEEEEEEKALIYGLRENPKKSFRLADPEFSFAPDTGSVVQDRESETESKNPTRQRSKRNRKSSFVVSHTQNLEPPKNPKMSFIVSLSTQPTEPEPMSSVSNTSPEEDVAMCLMMLSRDKWRKNNVVEHVQEQEEQGKISLNGCNKEIKFKRVRGKHMCDNCGKVFRSSRALGSHRSICRGEGNNDKIFECPFCHKVFGSGQALGGHKRSHLMPSSSSTANDCVRLKESFIDLNLPAPEEEDNLSVVSDA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4046g00003 302 SMART c2h2final6 209 229 IPR013087 -
Gabi4046g00003 302 SMART c2h2final6 241 263 IPR013087 -
Gabi4046g00003 302 SMART c2h2final6 4 26 IPR013087 -
Gabi4046g00003 302 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Gabi4046g00003 302 SUPERFAMILY beta-beta-alpha zinc fingers 209 263 IPR036236 -
Gabi4046g00003 302 Gene3D Classic Zinc Finger 206 263 - -
Gabi4046g00003 302 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Gabi4046g00003 302 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Gabi4046g00003 302 Pfam C2H2-type zinc finger 241 264 - -
Gabi4046g00003 302 Pfam C2H2-type zinc finger 209 228 - -
Gabi4046g00003 302 Pfam C2H2-type zinc finger 4 28 - -
Gabi4046g00003 302 MobiDBLite consensus disorder prediction 78 133 - -
Gabi4046g00003 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Gabi4046g00003 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Gabi4046g00003 302 MobiDBLite consensus disorder prediction 116 133 - -
Gabi4046g00003 302 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 302 IPR044303 GO:0006355
Gabi4046g00003 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4046g00003 Gabi-Chr4046 75765 76673 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4046g00003 1 299 C2H2 Transcription Factor Family AT3G60580 37.195 5.81e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi4046g00003 zf-C2H2_6 6.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4046g00003 - - gmx:100815124 374.785