Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00072 ATGCTTCAGCTGCTACACGGGACGCTTAGGGTAACCATAATTGAAGTTGATAGGCTGCAAACTGGATGTAATTTGGATTTCTGCATGAAGGACACAACACACAAGGGGAAGAGATTTCTAGCCCAAGTCAAGGGCTGTCTGCTATGCCGGCCTGAGATTGTTGGAACGAGACTCTATGCAACAGTTGATTTAGATAAGGCAAGGGTTGGACGGACAAGAATAATTGGAAATCAGCCCTCCAACCCCAAATGGAAGGAGACGTTTGAAATTTATTGTGCCCATCAAATCTCAAACATTGTATTCACTGTCAAAGATGGTAATCCAATTGGGGCAACACTAATTGGAAGAGCTTTTATACCTGTTGAGCAAGTTATCAAGGGCCCCATAAGTAATAGATGGTTTGAGATTTTAGATGAAGAAGATCATCGTCCTATACCAGGTGGCTCTAAGATTCGTGTCAGCGTGAATTTCACTAGTGTTACACAAGATAAAAGATGGTCTGAGGGAATATGGACGCCGTTTGTTGGAGTTCCTAGAACATTTTTCAACCAGAGACAAGGTTGTAGTGTTACTTTATACCAAGATGTCCATGTCCCTCGTAGCTATCTCCCTTGGATTCCAATATCTGGAGGGAGATATTATGAGCCTGGAAGATGTTGGGAGGACATTTTCAATGCCATTATGGAAGCAAAACAATTTATTTACATAACTGGGTGGTCTGTGTATACTGAAATAACCTTGATTAGGGACACAACTGTGTCGAAGTCAATAACACTTGGTGAACTGCTCAAGATGAAAGCTGATGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGACAGAACTTCTGTTCCTGAATTTAATAAAGATGGCTTGATGGCAACCCATGATCAGGAAACTGCGGATTACTTTAAAAACACAAATGTGCATTGTGTTTTGTGTCCACGTAACCCTGATGGTGGAAGAAGCATAGTTCAAGGTTTTCAAGTCTCAACCTTGTTTACTCATCACCAGAAGACTATAGTTGTTGACAGCCAAGTTGAAGGATCGAAGAAGAGAAAGGTCATAAGTTTTGTAGGTGGGATTGATCTTTGTGATGGGAGATATGATACTCAAGAACATCCACTGTTTTCAACTCTAAATACATTCCATCATGATGATTTTCATCAGCCAAATTTCACAGGCGCTTCCATTAAGAAAGGTGGTCCAAGAGAACCATGGCATGACATTCACTGCAAGCTAGAAGGACCTGTTGCATGGGATGTGTTGTACAATTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAAGCAATTACTATTCTCAATTGATCAGCTTGATCAAATGCTGGTCCACCCATCTGAGGCAATGACATCGGAAGAAGATAATAGGGATGCATGGACTGTTCAGTTGTTTAGATCCATTGATGGTGGTGCAGTTTCTGGTTTCCCCCAAGCCCCTAATGAAGTTGCTGAATTAGGCCTTGTTAGTGGGAAAGATAGCATCATTGATAGAAGTATTCAGGATGCTTATGTAAATGCTATTCGACGAGCAAAGAACTTCATCTACATTGAAAATCAATATTTCCTAGGGAGTTCATATGGTTGGAAAGCGTCTGATATCAAAGTTGAGGATATTGGTGCTTTGCATCTTATACCAAAGGAGCTTTCATTGAAGATTGTTAGCAAGATTGAAGCAGGACAGAGGTTTTGTGTCTACATTGTCATCCCAATGTGGCCAGAAGGTATACCTGAGAGTGCTTCTGTTCAGGCAATATTAGATTGGCAAAGGAGGACCATGGAGATGATGTATTCTGACATTGCTGATGCCATACGGAAGAAGGGAATTGAAGCACACCCTCGGGATTATTTGACATTTTTTTGCCTTGGCAAGAGGGAGAGTCGTATAGTAGGAGAATATACTCCTCCAGAGGAACCAGAGCCTGACAGTGACTATAGAAGAGCACAAAATGCAAGGAGGTTCATGATCTATGTTCATTCTAAGATGATGATAGTGGATGATGAATACATAATCATTGGTTCTGCCAACATCAACCAGAGGTCAATGGATGGTGGAAGAGACACAGAGATTGCAATGGGTGCGTTTCAACCGCATCATCTAGCATACCGTGCCCGACAAGGACCAAGAGGTCAGATATATGGGTTCAGGCGAGCATTATGGTACGAACATATTGGGGATCCTCATGATGAAGTGTTCGACGAACCACAAAGTAAGGAATGTGTGAACTTTGTGAATCATCTTGCTGAGGGGAACTGGGAGTTATACGCCAAGGACACATATGATAATGCTCCATTTCACCACCTTTTGCGCTACCCTGTACACGTTGCCTACGATGGAACTATAACAACACTGCCAGGGCTTGAATTTTTTCCTGACACTAAGGCAAAAATTCTTGGCTCAAAATCTGATTACCTTCCTCCAATCCTCACCACCTAG 2454 0.4205 MLQLLHGTLRVTIIEVDRLQTGCNLDFCMKDTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRIIGNQPSNPKWKETFEIYCAHQISNIVFTVKDGNPIGATLIGRAFIPVEQVIKGPISNRWFEILDEEDHRPIPGGSKIRVSVNFTSVTQDKRWSEGIWTPFVGVPRTFFNQRQGCSVTLYQDVHVPRSYLPWIPISGGRYYEPGRCWEDIFNAIMEAKQFIYITGWSVYTEITLIRDTTVSKSITLGELLKMKADEGVKVLMLVWDDRTSVPEFNKDGLMATHDQETADYFKNTNVHCVLCPRNPDGGRSIVQGFQVSTLFTHHQKTIVVDSQVEGSKKRKVISFVGGIDLCDGRYDTQEHPLFSTLNTFHHDDFHQPNFTGASIKKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWEKQVGKQLLFSIDQLDQMLVHPSEAMTSEEDNRDAWTVQLFRSIDGGAVSGFPQAPNEVAELGLVSGKDSIIDRSIQDAYVNAIRRAKNFIYIENQYFLGSSYGWKASDIKVEDIGALHLIPKELSLKIVSKIEAGQRFCVYIVIPMWPEGIPESASVQAILDWQRRTMEMMYSDIADAIRKKGIEAHPRDYLTFFCLGKRESRIVGEYTPPEEPEPDSDYRRAQNARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPHHLAYRARQGPRGQIYGFRRALWYEHIGDPHDEVFDEPQSKECVNFVNHLAEGNWELYAKDTYDNAPFHHLLRYPVHVAYDGTITTLPGLEFFPDTKAKILGSKSDYLPPILTT 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00072 817 Gene3D C2 domain 2 158 IPR035892 -
Gabi4044g00072 817 Gene3D Endonuclease Chain A 209 463 - -
Gabi4044g00072 817 PIRSF PLD_plant 1 817 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gabi4044g00072 817 SMART pld_4 660 687 IPR001736 GO:0003824
Gabi4044g00072 817 SMART pld_4 332 368 IPR001736 GO:0003824
Gabi4044g00072 817 FunFam Phospholipase D delta 210 448 - -
Gabi4044g00072 817 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 660 687 IPR001736 GO:0003824
Gabi4044g00072 817 PANTHER PHOSPHOLIPASE D 3 806 IPR015679 -
Gabi4044g00072 817 Pfam Phospholipase D Active site motif 333 368 IPR001736 GO:0003824
Gabi4044g00072 817 Pfam Phospholipase D Active site motif 661 687 IPR001736 GO:0003824
Gabi4044g00072 817 Gene3D Endonuclease Chain A 482 705 - -
Gabi4044g00072 817 Pfam Phospholipase D C terminal 735 807 IPR024632 -
Gabi4044g00072 817 SMART C2_3c 8 133 IPR000008 -
Gabi4044g00072 817 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 159 IPR035892 -
Gabi4044g00072 817 Pfam C2 domain 7 136 IPR000008 -
Gabi4044g00072 817 CDD C2_plant_PLD 4 158 - -
Gabi4044g00072 817 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 332 368 IPR001736 GO:0003824
Gabi4044g00072 817 SUPERFAMILY Phospholipase D/nuclease 177 442 - -
Gabi4044g00072 817 SUPERFAMILY Phospholipase D/nuclease 494 739 - -
Gabi4044g00072 817 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Gabi4044g00072 817 FunFam Phospholipase D 473 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00072 Gabi-Chr4044 578507 582423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00072 3 817 Phospholipase D Gene Family (Wang group) AT3G15730 63.845 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00072 K01115 - gmx:100794115 1272.3