Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00055 ATGGGAAAACATTGGTTTATCTTCCATATTATGGTTACACTGGGGTTGTGTATAATCCTTTTGTCTAAAGTCTGTTTGGGTGGTGTTTTGTATATTGGCAAGGTCTCACCCGGTTTTGAAGGTTCTCAAATGAATTGGATTGACAGAAATGGCCAGTTCCTCGTGTCAAACAAGGGAGAATTTGCCTTTGGCTTTATCACCACCGCAAATAACACCACCAAGTTTCTATTAGGGGTGTTCCACGTGGCTAGTTCCACGGTGGTTTGGACTGCAAATAGAGCATTTCCTGTTTCCAATTCTGATAAATTTGTGTTTGATGATAAGGGTAATGCTTTCTTACAGAAAGATGGAACTGTGGTGTGGTCTACAAATACAAGTGGCAAGGGAGTTTCTTCAATGGAATTGCAGGACACTGGAAATTTGGTTTTGCTTGGGAATGATAATAGTACAGTGATTTGGCAGAGTTTCAGCCATCCAACAGATACCTTGTTGCCAACACAGGACTTCACGGAGGGAATGAAACTCACAAGTGAACCTAGCCAAAACAACTTGACCTATGTTCTTGAGGTCAAATCTGGCAATGTCATTCTCTCCGCTGGTTTCCCAACTCCACAACCTTATTGGACTATGCAGAAGGATAACCGCAAAACCATTAATAAAGATGGTGATGCGGTCGCTTCAGCAACCCTTAGTGCAAATTCCTGGAGGTTCTATGATAATAAAAACAAATCGTTGTTATGGCAATTCATTTTCTCTGACGATGCAGGTACAAATGCCACTTGGGTTGCTGTTTTGGGAAGTGATGGCTTCATCACTTTCTCTAATCTCGACAATGGAGGTTCAAATGTGGCTTCTCCAACGAGAATACCACAAGATGCTTGCAGCACACCAGAACCTTGTGATCCATATAACGTATGCACTGGCAATCAGAAGTGTAGCTGCCCTTCTGTTCTTCCCAGTTGCAATCCGGGTTTTGTCTCTATTTGTGATAATAACTCAGAAAACTCTATAGAGTTCATTAAAGCTGATGATGGACTCAATTACTTTGCGCTTGAATTCCTTCAACCCTTTTCGAAAACCGATTTGGCTGGTTGCCAAACTTCTTGCCGTGGAAACTGTTCATGCCTTGCTATGTTCTTCCAGACAAGTTCAGGGAGCTGTTTCTTGTTGGACAGTGTAGGAAGCTTTGAGAAATCTGATACGGATTCAGTTTATGTTTCTTACATTAAGGTCTCGAGTGATAGAAGTGCTGGCAGTGGGGGTAGTGGAAGTGGCAGTAAGCACACCACAGTTGTTGTGGTCATTGTGCTAGTAACATTCTTTGTCATCTCTTTTCTGCTCTATGCAGGACTTAGGTACTGCAGAAAAAAACCAAAGTTGCCTGAGTCTCCTCGAGAGAATTCAGAAGAGGACAATTTCTTAGAGAACTTAACTGGTATGCCAATCCGTTACAGCTACAAAGATCTTGAAACAGCAACTAATAACTTCTCAGTGAAGCTAGGACAAGGGGGTTTCGGGTCAGTTTATAAAGGAGTTCTACCAGATGGGACTCAACTAGCAGTGAAGAAGCTTGAAGGTATTGGTCAAGGGAAGAAAGAGTTCAGAGCTGAAGTCAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTCAGAGGATTCTGTTCTGATGGAACTCATAGGCTTCTTGCTTATGATTATATGGCCAATGGCTCTTTGGATAAATGGATATTCAAGAAAAACAAAGGAGAATTTCTGTTGGATTGGGATACTAGGTTTAATATAGCTCTTGGAACAGCAAAAGGACTCGCTTATCTGCATGAAGATTGTGACTCAAAAATTGTTCATTGTGACATCAAGCCAGAAAATGTGCTTCTGGATGATCATTTCATGGCAAAAGTTTCAGATTTTGGTCTGGCTAAGCTAATGAATAGAGAACAAAGTCATGTTTTTACAACACTGAGGGGCACAAGGGGGTATCTTGCACCGGAGTGGATAACAAACTATGCTATATCAGAGAAAAGTGATGTTTATAGCTATGGGATGGTGTTGCTAGAGATCATTGGGGGAAGGAAAAATTATGATCCGAGTGAAACTACAGAGAAGTCCCATTTCCCAAATTATGCTTTTAAGATGATGGAAGAAGGGAAGCTGAAAGATATTCTTGATTCAGAGTTGAAAATAAATGATCGTGATGATAGGGTTCATTGTGCTATCAAAGTTGCATTGTGGTGCATACAAGAAGACATGTCTTTGAGGCCTTCAATGACCAAAGTTGCACAAATGCTGGAGGGTCTTTGCACTGTTCCTAAGCCACCAACAAGTTACCCCTTGAATTCTCGCCTTTACTCCACTGTATTCAGAACCTCCAGTGAAGGGGCCACTTCTTCAGGCCCATCAGACTGTAATAGTGATGCTAATCTCTCTGCGGTTCGTCTTTCAGGACCAAGATAA 2457 0.4176 MGKHWFIFHIMVTLGLCIILLSKVCLGGVLYIGKVSPGFEGSQMNWIDRNGQFLVSNKGEFAFGFITTANNTTKFLLGVFHVASSTVVWTANRAFPVSNSDKFVFDDKGNAFLQKDGTVVWSTNTSGKGVSSMELQDTGNLVLLGNDNSTVIWQSFSHPTDTLLPTQDFTEGMKLTSEPSQNNLTYVLEVKSGNVILSAGFPTPQPYWTMQKDNRKTINKDGDAVASATLSANSWRFYDNKNKSLLWQFIFSDDAGTNATWVAVLGSDGFITFSNLDNGGSNVASPTRIPQDACSTPEPCDPYNVCTGNQKCSCPSVLPSCNPGFVSICDNNSENSIEFIKADDGLNYFALEFLQPFSKTDLAGCQTSCRGNCSCLAMFFQTSSGSCFLLDSVGSFEKSDTDSVYVSYIKVSSDRSAGSGGSGSGSKHTTVVVVIVLVTFFVISFLLYAGLRYCRKKPKLPESPRENSEEDNFLENLTGMPIRYSYKDLETATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLRGFCSDGTHRLLAYDYMANGSLDKWIFKKNKGEFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPSETTEKSHFPNYAFKMMEEGKLKDILDSELKINDRDDRVHCAIKVALWCIQEDMSLRPSMTKVAQMLEGLCTVPKPPTSYPLNSRLYSTVFRTSSEGATSSGPSDCNSDANLSAVRLSGPR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00055 818 CDD STKc_IRAK 500 767 - -
Gabi4044g00055 818 SUPERFAMILY Protein kinase-like (PK-like) 474 765 IPR011009 -
Gabi4044g00055 818 FunFam serine/threonine-protein kinase PBS1-like 462 568 - -
Gabi4044g00055 818 CDD B_lectin 47 159 IPR001480 -
Gabi4044g00055 818 ProSiteProfiles Bulb-type lectin domain profile. 39 156 IPR001480 -
Gabi4044g00055 818 ProSitePatterns Protein kinases ATP-binding region signature. 500 523 IPR017441 GO:0005524
Gabi4044g00055 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 84 210 IPR036426 -
Gabi4044g00055 818 MobiDBLite consensus disorder prediction 794 811 - -
Gabi4044g00055 818 Gene3D Phosphorylase Kinase; domain 1 461 568 - -
Gabi4044g00055 818 Gene3D Transferase(Phosphotransferase) domain 1 569 772 - -
Gabi4044g00055 818 SMART blect_4 45 159 IPR001480 -
Gabi4044g00055 818 FunFam S-receptor-like kinase 5 569 773 - -
Gabi4044g00055 818 MobiDBLite consensus disorder prediction 794 818 - -
Gabi4044g00055 818 Pfam Protein kinase domain 498 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00055 818 ProSiteProfiles Protein kinase domain profile. 494 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00055 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Gabi4044g00055 818 Pfam D-mannose binding lectin 86 170 IPR001480 -
Gabi4044g00055 818 FunFam Serine/threonine-protein kinase 41 157 - -
Gabi4044g00055 818 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 45 775 - -
Gabi4044g00055 818 PIRSF SRK 6 815 IPR024171 GO:0004674
Gabi4044g00055 818 Gene3D - 45 158 IPR036426 -
Gabi4044g00055 818 SMART serkin_6 494 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00055 Gabi-Chr4044 527023 529479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00055 442 776 Receptor kinase-like Gene Family AT5G20050 46.761 1.36e-96 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi4044g00055 Pkinase 1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00055 - - gmx:100791158 1345.87