Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00049 ATGGAGCTTCAGTTAGGTCTGCCCCTCCCCACTCACAATCCCATCGAGGGATTCGACCATAACAACCCTGCCTTAGTGAAACAAAGTTGTTGTTCTGAAAGCAAGAAGCATGGCAAAAACAAACGTAGCTACGAAGAGTCCTTTGGACATTTTTCGAAACCTTTGCCTTTACTAGTTTGGAGCGGACAGCCAAACGAGGAAGATGACCGCAGTGAAAAGATGCACACAAACATTCACACATCAAACAAGAACAACAAAGAAGAAAACCATTTGGTGGGGTGGCCACCAATTAAATCATGGAGAAAGAAAGAACTCCATCAGCAGCATCCTGCAGGAGGCCAGATCAGGAACAATAGGATGCAAGCTAATCAAAGTAGAGGATTAAACTCTTTATATGTAAAGGTTAACATGGAAGGGATAGCAATAGGAAGGAAAATCGATTTGAGGCTTTACAACTCTTATCAAACTCTTACAAACACGTTGATTAGCATGTTTGCTAAATACCAAAAATTTGAGGAAGCAGGAGCAAGCTATACACTCACCTTTCAAAACGAACAAGGGGATTGGCTGCTTGCTGGACATGTTCCATGGAAATCCTTCATAGGTACGGTGCGGCGTTTGGCGATATTGAGGAATTGA 639 0.4272 MELQLGLPLPTHNPIEGFDHNNPALVKQSCCSESKKHGKNKRSYEESFGHFSKPLPLLVWSGQPNEEDDRSEKMHTNIHTSNKNNKEENHLVGWPPIKSWRKKELHQQHPAGGQIRNNRMQANQSRGLNSLYVKVNMEGIAIGRKIDLRLYNSYQTLTNTLISMFAKYQKFEEAGASYTLTFQNEQGDWLLAGHVPWKSFIGTVRRLAILRN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00049 212 ProSiteProfiles PB1 domain profile. 130 212 IPR000270 GO:0005515
Gabi4044g00049 212 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 211 IPR003311 GO:0005634|GO:0006355
Gabi4044g00049 212 SUPERFAMILY CAD & PB1 domains 129 207 - -
Gabi4044g00049 212 Pfam AUX/IAA family 175 211 IPR033389 -
Gabi4044g00049 212 Pfam AUX/IAA family 2 169 IPR033389 -
Gabi4044g00049 212 Gene3D - 131 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00049 Gabi-Chr4044 468688 469792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00049 121 209 B3 DNA Binding Superfamily AT1G59750 33.708 2.98e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi4044g00049 AUX_IAA 2.6e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00049 K14484 - gmx:100802759 325.865