Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00042 ATGGCACAAGTTATTGCTACTCCACCAGCTACTTTTGAGTATGAACTCTTGGTTGGTGATCCTGAGCACCTTAGAACTGTCACAGCCTCATCCAGCAACAAGGACCTATGGATTGAACCTGAAAGGTTGAAACTCAGACACAGAATTGGTCGTGGGACCTTTGGTGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTGTCATGAAGTTGCTGTCAAGATATTACCTCCAATCAGAGAGGAACATATGAAGACTGTATTAGAGAAATTTCACGAATTATATTTTCAGTGCAAAGGGGTGCCTAGGGTTTGCTGTCTACTTGGAATTTCAATTTTAAATGGAAGGATATGCATCATTATGAATTTTTATGAGGGTTCAATCGGTGACAAGATGGCTAGACTCAGAGAGGGGAGGATTTTATTGCCTGATGTTCTGAGGTATGGTATCAATCTTGCTCAAGGTATTCTGGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATTTAATGTGCTTCTCGATGATAGTGATCAAGCAATATTGGGAGATGTTGGCATTCCCAGTCTTTTGCTTGGTTCTACATTCATGAGTTCAGATATGGCTCACAGGCTTGGTACGCCAAATTACATGGCTCCAGAACAATGGCAACCAAAAGTTAGAGGCCCTATATCCTTTGAAACCGATTCATGGGGATTCGGATGCACCATTGTGGAAATGTTGACAGGTAATCAACTTTGGTATGGACTTCCTGTTGGTGAAATTTACCAATCGGTTGTTGAAAAGCATGAAAAACCACATATTCCTTGTGGCCTTCCTTCTTCAATTGAGAATATCCTCAGTGGATGCTTTGAGTATGATTTAAGGAATCGTCCTTCAATGGTAGATATTCTGACAGTCTTTAAAAGCTCACTGAATGCAGTAGCCAATGATGGAGGGTGGAGATTTCTCGGAACTCAAAAAATTACAGTAAAATCAAGTAGCATTGGCTATACACAGTGGTTCCTCTCAAAGGATCATCTTCAGGTGGGTGACATGGTGCGATCTAGAAAGCTTTCCAATTCATGCAAGCCTCAAAACATGGATGTTCCAGAAGGAAATGTTGTTGGTTTAGAACGTCATGCAGATAATGGTTTTGTTTTAGTGAGGGTCCATGGTGTTCATGACCCTATAAGGATTCATGCATCAACTCTTGAACGTGTCACTAATGGTTTGGCAGCTGGTGATTGGGTACGCTTGAAGGAAGAAGATGAGAAGCACTCGCCAGTGGGTATTCTTCATTCCGTCGATCGTGATGGCAGAGTGGATGTTGGGTTTACTGGGCTGCAAACTCTTTGGAAAGGAAATTCTTCAGAACTTGAAATGGCAGAATCTTACTGTGTGGGGCAGTTTACTAGGCTGAAAGCCAATGTTTTGAGTCCTCGATTCGAATGGCCACGTAAAAGGGGAGGAGCCTGGGCTACTGGTAAGATTTCATGGATCCTACCAAATGGGTGTCTAGTTGTCAAGTTCCCAGGAATGTTGACTTTTGGGGATGAACCAAGCACCTTCTTGGCTGATCCCTCTGAGGTTGATGTGATTAATTTCAGGTCTTGTCCATGTATGTTAAAGAAGTATCAACATGTAGAGGATCATCACTGGGCAGTTAGACCTGTTCTAATTGCATTTGGCATTCTTACAGCTGTGAAACTAGGGATGTTAGTTGGAAAGAAAATGGGGAGGAACATGAATGTTAATGCTATAGAGAATGAAAACCCAAGGTTGCAAGCAATATACCAAGCCATCAGAGTGGTGCCTCACTTCCCAAAACAAGGAATAATGTTTCAAGACATAACGACATTGTTGTTGGATCACAAGGCGTTTAAAGACACGGTCGACATTTTTGTCGATCGTTACAGAGACATGCACATTTCTGTTGTTGCCGGAATTGAAGCAAGGGGATTCCTGTTTGGTCCCTCAATTGCTTTGGGCATTGGTGCAAAGTTTGTTCCTTTACGCAAACCTCGGAAGCTGCCAGGTGAAGTAATTTCAGAAAAATATGCTCTAGAATATGGAACTGATTGTTTGGAGCTGCATGTTGGAGCTGTCCAGCCCGGTGAACGGGCCATAGTTATTGATGACTTGGTGGCCACAGGTGGTACTCTATCTGCAGCAATAAGACTTCTAGAACGTCTTGGTGCTGAAGTAGTGGAATGTGCTTGTGTGATTGGTGTGCCTGAGGTTAAGGGACAGTGCAGGCTTATCGGAAAGCCACTTTATGTTCTTGTGGAGCCGCGTCAAGTAGAAAAAAATGCTTTTGAGTTGTGA 2325 0.4267 MAQVIATPPATFEYELLVGDPEHLRTVTASSSNKDLWIEPERLKLRHRIGRGTFGDVWLATHHQSTEDYDECHEVAVKILPPIREEHMKTVLEKFHELYFQCKGVPRVCCLLGISILNGRICIIMNFYEGSIGDKMARLREGRILLPDVLRYGINLAQGILELHSKGILVLNLKPFNVLLDDSDQAILGDVGIPSLLLGSTFMSSDMAHRLGTPNYMAPEQWQPKVRGPISFETDSWGFGCTIVEMLTGNQLWYGLPVGEIYQSVVEKHEKPHIPCGLPSSIENILSGCFEYDLRNRPSMVDILTVFKSSLNAVANDGGWRFLGTQKITVKSSSIGYTQWFLSKDHLQVGDMVRSRKLSNSCKPQNMDVPEGNVVGLERHADNGFVLVRVHGVHDPIRIHASTLERVTNGLAAGDWVRLKEEDEKHSPVGILHSVDRDGRVDVGFTGLQTLWKGNSSELEMAESYCVGQFTRLKANVLSPRFEWPRKRGGAWATGKISWILPNGCLVVKFPGMLTFGDEPSTFLADPSEVDVINFRSCPCMLKKYQHVEDHHWAVRPVLIAFGILTAVKLGMLVGKKMGRNMNVNAIENENPRLQAIYQAIRVVPHFPKQGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMHISVVAGIEARGFLFGPSIALGIGAKFVPLRKPRKLPGEVISEKYALEYGTDCLELHVGAVQPGERAIVIDDLVATGGTLSAAIRLLERLGAEVVECACVIGVPEVKGQCRLIGKPLYVLVEPRQVEKNAFEL 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00042 774 ProSitePatterns Protein kinases ATP-binding region signature. 49 78 IPR017441 GO:0005524
Gabi4044g00042 774 PANTHER OS06G0639500 PROTEIN 6 589 - -
Gabi4044g00042 774 Pfam Mind bomb SH3 repeat domain 347 459 IPR040847 -
Gabi4044g00042 774 Gene3D Phosphorylase Kinase; domain 1 18 128 - -
Gabi4044g00042 774 Pfam Phosphoribosyl transferase domain 623 745 IPR000836 -
Gabi4044g00042 774 Pfam Protein tyrosine and serine/threonine kinase 43 305 IPR001245 GO:0004672|GO:0006468
Gabi4044g00042 774 SUPERFAMILY Protein kinase-like (PK-like) 36 305 IPR011009 -
Gabi4044g00042 774 FunFam Adenine phosphoribosyltransferase 1 585 764 - -
Gabi4044g00042 774 CDD STKc_PknB_like 44 302 - -
Gabi4044g00042 774 SUPERFAMILY PRTase-like 598 756 IPR029057 -
Gabi4044g00042 774 ProSiteProfiles Protein kinase domain profile. 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00042 774 Gene3D Transferase(Phosphotransferase) domain 1 129 334 - -
Gabi4044g00042 774 NCBIfam adenine phosphoribosyltransferase 598 762 IPR005764 GO:0003999|GO:0005737|GO:0006168
Gabi4044g00042 774 Hamap Adenine phosphoribosyltransferase [apt]. 597 764 IPR005764 GO:0003999|GO:0005737|GO:0006168
Gabi4044g00042 774 Gene3D - 584 764 IPR029057 -
Gabi4044g00042 774 CDD PRTases_typeI 631 763 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00042 Gabi-Chr4044 436067 452483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00042 590 763 PRT Gene Family AT1G27450 70.690 1.12e-85 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gabi4044g00042 PK_Tyr_Ser-Thr 2.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00042 - - gmx:100780636 1031.17