Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00017 ATGGCGTACCATAACCACCACCTCCCCCAAGACCTCCCACTCCACCACTTCACAGACCAACAACACCAACACCAACACCATAACCAGCCTCTCACTGATAACTCCATATTGCCAGACCAGCTTGCTTCGTCACCAGACCACACCACCAAACCTGGCTCCGATCCTCACCACTCGCTCCAAACCGCACCCAATTGGCTCAACAACGCCCTTCTTCGCACCCACTACACCGACAACAACAACAACAATAACAACTCCAACAACAACAACAACGTTAACGCTGCCAACAATAATAACGGCACCAATTTCCTCAACCTCCATACTGCCGCTTCCGACACCACCACCGGAGCCGGCGTTGCTGCTTCCCAATCATCTGGCCAATGGCTTTCCCGCTCGATTCTCCACCGTAACCGCAGCGAAGTCATCGACGACGTCGCCGCCGCAGCAGCCTTGTCGCACGAATCCGCCGATTTGAAGGCGACCGGCGGTGGAGAGAAGAACGAGGACAGCGGCGGCCGGGACGGCCTGATGAGCTGGCAGAATGCTAGGTATAAGGCGGAGATTCTAGCGCACCCGTTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCCAGAATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCGTTCGGACATGGGGCTCAGGACATGCTTGGGGATGATAAGGAACTCGATCAGTTCTTGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTTATGGCTTGCTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGGGAAGGTACAGGAGCAACGATGTCTGATGACGAAGATGACCAAGTAGATAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAACTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGACAAGATTGGTGCAGGAAACGGGTTTGCAATTAAAACAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTGA 1341 0.5101 MAYHNHHLPQDLPLHHFTDQQHQHQHHNQPLTDNSILPDQLASSPDHTTKPGSDPHHSLQTAPNWLNNALLRTHYTDNNNNNNNSNNNNNVNAANNNNGTNFLNLHTAASDTTTGAGVAASQSSGQWLSRSILHRNRSEVIDDVAAAAALSHESADLKATGGGEKNEDSGGRDGLMSWQNARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQDMLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00017 446 Pfam KNOX1 domain 183 224 IPR005540 GO:0003677|GO:0005634
Gabi4044g00017 446 ProSiteProfiles 'Homeobox' domain profile. 369 432 IPR001356 GO:0003677
Gabi4044g00017 446 Pfam Homeobox KN domain 389 428 IPR008422 GO:0003677|GO:0006355
Gabi4044g00017 446 MobiDBLite consensus disorder prediction 24 61 - -
Gabi4044g00017 446 SMART KNOX1_2 181 225 IPR005540 GO:0003677|GO:0005634
Gabi4044g00017 446 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 431 - -
Gabi4044g00017 446 SMART HOX_1 371 436 IPR001356 GO:0003677
Gabi4044g00017 446 CDD homeodomain 372 433 IPR001356 GO:0003677
Gabi4044g00017 446 FunFam homeobox protein knotted-1-like 3 isoform X1 370 431 - -
Gabi4044g00017 446 MobiDBLite consensus disorder prediction 18 61 - -
Gabi4044g00017 446 Gene3D - 368 440 - -
Gabi4044g00017 446 ProSiteProfiles ELK domain profile. 349 369 IPR005539 GO:0003677
Gabi4044g00017 446 SUPERFAMILY Homeodomain-like 371 434 IPR009057 -
Gabi4044g00017 446 SMART KNOX2_2 237 292 IPR005541 GO:0003677|GO:0005634
Gabi4044g00017 446 Pfam KNOX2 domain 241 291 IPR005541 GO:0003677|GO:0005634
Gabi4044g00017 446 Pfam ELK domain 349 370 IPR005539 GO:0003677
Gabi4044g00017 446 SMART ELK_2 349 370 IPR005539 GO:0003677
Gabi4044g00017 446 MobiDBLite consensus disorder prediction 291 310 - -
Gabi4044g00017 446 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00017 Gabi-Chr4044 184752 189619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00017 1 446 Homeobox Transcription Factor Family AT5G25220 67.026 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi4044g00017 KNOX2 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00017 - - qsa:O6P43_015734 674.855