Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00016 ATGGCGTACCATAACCACCACCTCCCCCAAGACCTCCCACTCCACCACTTCACAGACCAACAACACCAACACCAACACCATAACCAGCCTCTCACTGATAACTCCATATTGCCAGACCAGCTTGCTTCGTCACCAGACCACACCACCAAACCTGGCTCCGATCCTCACCACTCGCTCCAAACCGCACCCAATTGGCTCAACAACGCCCTTCTTCGCACCCACTACACCGACAACAACAACAACAATAACAACTCCAACAACAACAACAACGTTAACGCTGCCAACAATAATAACGGCACCAATTTCCTCAACCTCCATACTGCCGCTTCCGACACCACCACCGGAGCCGGCGTTGCTGCTTCCCAATCATCTGGCCAATGGCTTTCCCGCTCGATTCTCCACCGTAACCGCAGCGAAGTCATCGACGACGTCGCCGCCGCAGCAGCCTTGTCGCACGAATCCGCCGATTTGAAGGCGACCGGCGGTGGAGAGAAGAACGAGGACAGCGGCGGCCGGGACGGCCTGATGAGCTGGCAGAATGCTAGGTATAAGGCGGAGATTCTAGCGCACCCGTTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCCAGAATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCGTTCGGACATGGGGCTCAGGACATGCTTGGGGATGATAAGGAACTCGATCAGTTCTTGTCGCACTATGTTTTGTTGCTCTGTTCCTTCAAAGAACAACTCCAACAACATGTCCGGGTTCATGCAATGGAAGCAGTTATGGCTTGCTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGGGAAGGTACAGGAGCAACGATGTCTGATGACGAAGATGACCAAGTAGATAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTTGGCCCTCTTATTCCAACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAACTAAAGCATGAATTGAAACAGGGTTATAAAGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGACAAGATTGGTGCAGGAAACGGGTTTGCAATTAAAACAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGTGCAGGTGATAATAGTATTGATCGTTACATGTAA 1371 0.5055 MAYHNHHLPQDLPLHHFTDQQHQHQHHNQPLTDNSILPDQLASSPDHTTKPGSDPHHSLQTAPNWLNNALLRTHYTDNNNNNNNSNNNNNVNAANNNNGTNFLNLHTAASDTTTGAGVAASQSSGQWLSRSILHRNRSEVIDDVAAAAALSHESADLKATGGGEKNEDSGGRDGLMSWQNARYKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQDMLGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKTRLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKSAGDNSIDRYM 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00016 456 ProSiteProfiles 'Homeobox' domain profile. 369 432 IPR001356 GO:0003677
Gabi4044g00016 456 MobiDBLite consensus disorder prediction 432 456 - -
Gabi4044g00016 456 Gene3D - 368 443 - -
Gabi4044g00016 456 Pfam Homeobox KN domain 389 428 IPR008422 GO:0003677|GO:0006355
Gabi4044g00016 456 MobiDBLite consensus disorder prediction 24 61 - -
Gabi4044g00016 456 Pfam KNOX2 domain 241 291 IPR005541 GO:0003677|GO:0005634
Gabi4044g00016 456 SMART KNOX1_2 181 225 IPR005540 GO:0003677|GO:0005634
Gabi4044g00016 456 SUPERFAMILY Homeodomain-like 371 434 IPR009057 -
Gabi4044g00016 456 Pfam ELK domain 349 370 IPR005539 GO:0003677
Gabi4044g00016 456 SMART HOX_1 371 436 IPR001356 GO:0003677
Gabi4044g00016 456 Pfam KNOX1 domain 183 224 IPR005540 GO:0003677|GO:0005634
Gabi4044g00016 456 CDD homeodomain 372 433 IPR001356 GO:0003677
Gabi4044g00016 456 MobiDBLite consensus disorder prediction 18 61 - -
Gabi4044g00016 456 ProSiteProfiles ELK domain profile. 349 369 IPR005539 GO:0003677
Gabi4044g00016 456 SMART KNOX2_2 237 292 IPR005541 GO:0003677|GO:0005634
Gabi4044g00016 456 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 77 434 - -
Gabi4044g00016 456 SMART ELK_2 349 370 IPR005539 GO:0003677
Gabi4044g00016 456 MobiDBLite consensus disorder prediction 74 104 - -
Gabi4044g00016 456 MobiDBLite consensus disorder prediction 291 310 - -
Gabi4044g00016 456 FunFam homeobox protein knotted-1-like 3 isoform X1 370 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00016 Gabi-Chr4044 184751 189619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00016 1 445 Homeobox Transcription Factor Family AT5G25220 66.955 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gabi4044g00016 KNOX2 2.6e-20 No_clan