Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00011 ATGAAAATGAAGCTTCTTCTTATGTCTCTCTTGCTTCTTATTCTTCACGAACCCATTTGGGTTCACGGGGTTCCTGTTTCCTCACCTCAAATTATACCCATTACTCCACTTTCCACCTCCATGCCTGCTATCTCCCCAGGTACTCAGGTGGGGGAGGAGCACCACCAAAAAGATTCGGACAAGAAAGTGATAATAGCTGTCGTTGTAGCCAGCACTGTACTTGGTGGAGTCATTTTGAGTTTTTTATGCTTCTGGTTTTGTCATAGCAAGTATCGGTCAAAATCGAATAGGAAAAATGTTCAAAGCTCAGATGCAGAAAAGGGGTTGACTGTAGCAAGATATTTGAGTGAATTCAGTTCCATCAAGATAGTTGGTATGAAGGGGTCTGTTCCAATAATTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTCATGAAAGTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGATTGGATGATAATTTGGATGTTGCCATCAAGAAACTACACTGTGAAAGTCAGAATGCTGGGAGAGAATTTGAGAACGAGCTGGATTTGTTAAGTAAAATTCAGCATCCAAATATTATATCTTTACTGGGTTGTAGCATTACTGACGATACGAGGTCTATTGTTTATGAGTTGATGCAAAATGGATCCTTGGACGCTCAGTTACATGGACCCTCTCATGGCTCGGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCGGTGATCCATAGAGATATGAAATCTTCTAATATCCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCTATCACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTTTCAGGCACCTTGGGGTACTTAGCCCCGGAGTATCTTTTGGATGGCAAATTGACCGATAAAAGTGATGTCTATGCTTTTGGGGTTGTGCTCCTGGAGCTACTCTTAGGAAGAAAGCCTGTGGAAAAAAAGGCACCAGCTCAGTGCCAATCTATAGTCACATGGGCCATGCCGCAGCTCACAGACAGATCCAAGCTCCCAAACATTGTGGATCCAGTGATTAAGAATACAATGGATCTCAAGCACTTATATCAGGTTGCTGCTGTAGCAGTGCTGTGCGTGCAACCAGAACCAAGTTACCGTCCCCTGATCACAGATGTTCTTCATTCACTTATCCCCCTTGTTCCCATTGAGCTTGGAGGAACGCTCAGAGCTTCACAAGTGACACAGCAGGTCACTCCTGCTGATCCACCAGTGAATTCCAGTCATCGTTAG 1347 0.4321 MKMKLLLMSLLLLILHEPIWVHGVPVSSPQIIPITPLSTSMPAISPGTQVGEEHHQKDSDKKVIIAVVVASTVLGGVILSFLCFWFCHSKYRSKSNRKNVQSSDAEKGLTVARYLSEFSSIKIVGMKGSVPIIDYKQIEKTTNNFHESNILGEGGFGCVYKARLDDNLDVAIKKLHCESQNAGREFENELDLLSKIQHPNIISLLGCSITDDTRSIVYELMQNGSLDAQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYLAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKKAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRASQVTQQVTPADPPVNSSHR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00011 448 ProSitePatterns Protein kinases ATP-binding region signature. 151 174 IPR017441 GO:0005524
Gabi4044g00011 448 CDD STKc_IRAK 151 418 - -
Gabi4044g00011 448 ProSiteProfiles Protein kinase domain profile. 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00011 448 FunFam probable receptor-like protein kinase At1g80640 221 420 - -
Gabi4044g00011 448 Pfam Protein kinase domain 145 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00011 448 SUPERFAMILY Protein kinase-like (PK-like) 124 415 IPR011009 -
Gabi4044g00011 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Gabi4044g00011 448 SMART serkin_6 145 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00011 448 Gene3D Phosphorylase Kinase; domain 1 106 220 - -
Gabi4044g00011 448 PANTHER OS01G0750732 PROTEIN 24 419 - -
Gabi4044g00011 448 Gene3D Transferase(Phosphotransferase) domain 1 221 420 - -
Gabi4044g00011 448 FunFam Protein kinase superfamily protein 112 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00011 Gabi-Chr4044 88381 91899 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00011 19 361 Receptor kinase-like Gene Family AT1G80640 47.701 4.06e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gabi4044g00011 Pkinase 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00011 - - vra:106764755 673.7