Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00010 ATGAAAATGAAGCTTCTTCTTATGTCTCTCTTGCTTCTTATTCTTCACGAACCCATTTGGGTTCACGGGGTTCCTGTTTCCTCACCTCAAATTATACCCATTACTCCACTTTCCACCTCCATGCCTGCTATCTCCCCAGGTACTCAGGTGGGGGAGGAGCACCACCAAAAAGATTCGGACAAGAAAGTGATAATAGCTGTCGTTGTAGCCAGCACTGTACTTGGTGGAGTCATTTTGAGTTTTTTATGCTTCTGGTTTTGTCATAGCAAGTATCGGTCAAAATCGAATAGGAAAAATGTTCAAAGCTCAGTTGGTATGAAGGGGTCTGTTCCAATAATTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTCATGAAAGTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGATTGGATGATAATTTGGATGTTGCCATCAAGAAACTACACTGTGAAAGTCAGAATGCTGGGAGAGAATTTGAGAACGAGCTGGATTTGTTAAGTAAAATTCAGCATCCAAATATTATATCTTTACTGGGTTGTAGCATTACTGACGATACGAGGTCTATTGTTTATGAGTTGATGCAAAATGGATCCTTGGACGCTCAGTTACATGGACCCTCTCATGGCTCGGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCGGTGATCCATAGAGATATGAAATCTTCTAATATCCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCTATCACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTTTCAGGCACCTTGGGGTACTTAGCCCCGGAGTATCTTTTGGATGGCAAATTGACCGATAAAAGTGATGTCTATGCTTTTGGGGTTGTGCTCCTGGAGCTACTCTTAGGAAGAAAGCCTGTGGAAAAAAAGGCACCAGCTCAGTGCCAATCTATAGTCACATGGGCCATGCCGCAGCTCACAGACAGATCCAAGCTCCCAAACATTGTGGATCCAGTGATTAAGAATACAATGGATCTCAAGCACTTATATCAGGTTGCTGCTGTAGCAGTGCTGTGCGTGCAACCAGAACCAAGTTACCGTCCCCTGATCACAGATGTTCTTCATTCACTTATCCCCCTTGTTCCCATTGAGCTTGGAGGAACGCTCAGAGCTTCACAAGTGACACAGCAGGTCACTCCTGCTGATCCACCAGTGAATTCCAGTCATCGTTAG 1287 0.4343 MKMKLLLMSLLLLILHEPIWVHGVPVSSPQIIPITPLSTSMPAISPGTQVGEEHHQKDSDKKVIIAVVVASTVLGGVILSFLCFWFCHSKYRSKSNRKNVQSSVGMKGSVPIIDYKQIEKTTNNFHESNILGEGGFGCVYKARLDDNLDVAIKKLHCESQNAGREFENELDLLSKIQHPNIISLLGCSITDDTRSIVYELMQNGSLDAQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYLAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKKAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRASQVTQQVTPADPPVNSSHR 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00010 428 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Gabi4044g00010 428 SMART serkin_6 125 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00010 428 PANTHER OS01G0750732 PROTEIN 24 399 - -
Gabi4044g00010 428 CDD STKc_IRAK 131 398 - -
Gabi4044g00010 428 Gene3D Transferase(Phosphotransferase) domain 1 201 400 - -
Gabi4044g00010 428 ProSiteProfiles Protein kinase domain profile. 125 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00010 428 Pfam Protein kinase domain 125 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00010 428 FunFam probable receptor-like protein kinase At1g80640 201 400 - -
Gabi4044g00010 428 FunFam Protein kinase superfamily protein 93 200 - -
Gabi4044g00010 428 SUPERFAMILY Protein kinase-like (PK-like) 97 395 IPR011009 -
Gabi4044g00010 428 Gene3D Phosphorylase Kinase; domain 1 86 200 - -
Gabi4044g00010 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00010 Gabi-Chr4044 88381 91899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00010 19 341 Receptor kinase-like Gene Family AT1G80640 47.647 5.88e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gabi4044g00010 Pkinase 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00010 - - vra:106764755 640.573