Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00009 ATGAAAATGAAGCTTCTTCTTATGTCTCTCTTGCTTCTTATTCTTCACGAACCCATTTGGGTTCACGGGGTTCCTGTTTCCTCACCTCAAATTATACCCATTACTCCACTTTCCACCTCCATGCCTGCTATCTCCCCAGGTACTCAGGTGGGGGAGGAGCACCACCAAAAAGATTCGGACAAGAAAGTGATAATAGCTGTCGTTGTAGCCAGCACTGTACTTGGTGGAGTCATTTTGAGTTTTTTATGCTTCTGGTTTTGTCATAGCAAGTATCGGTCAAAATCGAATAGGAAAAATGTTCAAAGCTCAGTTGGTATGAAGGGGTCTGTTCCAATAATTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTCATGAAAGTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGATTGGATGATAATTTGGATGTTGCCATCAAGAAACTACACTGTGAAAGTCAGAATGCTGGGAGAGAATTTGAGAACGAGCTGGATTTGTTAAGTAAAATTCAGCATCCAAATATTATATCTTTACTGGGTTGTAGCATTACTGACGATACGAGGTCTATTGTTTATGAGTTGATGCAAAATGGATCCTTGGACGCTCAGTTACATGGACCCTCTCATGGCTCGGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCGGTGATCCATAGAGATATGAAATCTTCTAATATCCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCTATCACTGATGGGTCCCAAAGCAAGAAGAACATTAAGCTTTCAGGCACCTTGGGGTACTTAGCCCCGGAGTATCTTTTGGATGGAAGAAAGCCTGTGGAAAAAAAGGCACCAGCTCAGTGCCAATCTATAGTCACATGGGCCATGCCGCAGCTCACAGACAGATCCAAGCTCCCAAACATTGTGGATCCAGTGATTAAGAATACAATGGATCTCAAGCACTTATATCAGGTTGCTGCTGTAGCAGTGCTGTGCGTGCAACCAGAACCAAGTTACCGTCCCCTGATCACAGATGTTCTTCATTCACTTATCCCCCTTGTTCCCATTGAGCTTGGAGGAACGCTCAGAGCTTCACAAGTGACACAGCAGGTCACTCCTGCTGATCCACCAGTGAATTCCAGTCATCGTTAG 1224 0.4338 MKMKLLLMSLLLLILHEPIWVHGVPVSSPQIIPITPLSTSMPAISPGTQVGEEHHQKDSDKKVIIAVVVASTVLGGVILSFLCFWFCHSKYRSKSNRKNVQSSVGMKGSVPIIDYKQIEKTTNNFHESNILGEGGFGCVYKARLDDNLDVAIKKLHCESQNAGREFENELDLLSKIQHPNIISLLGCSITDDTRSIVYELMQNGSLDAQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITDGSQSKKNIKLSGTLGYLAPEYLLDGRKPVEKKAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRASQVTQQVTPADPPVNSSHR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00009 407 PANTHER OS01G0750732 PROTEIN 24 378 - -
Gabi4044g00009 407 ProSiteProfiles Protein kinase domain profile. 125 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00009 407 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Gabi4044g00009 407 SMART serkin_6 125 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00009 407 Gene3D Transferase(Phosphotransferase) domain 1 201 378 - -
Gabi4044g00009 407 FunFam Protein kinase superfamily protein 93 200 - -
Gabi4044g00009 407 SUPERFAMILY Protein kinase-like (PK-like) 97 374 IPR011009 -
Gabi4044g00009 407 Pfam Protein kinase domain 125 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4044g00009 407 FunFam Protein kinase superfamily protein 201 273 - -
Gabi4044g00009 407 Gene3D Phosphorylase Kinase; domain 1 86 200 - -
Gabi4044g00009 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00009 Gabi-Chr4044 88381 91899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00009 52 378 Receptor kinase-like Gene Family AT3G58690 38.630 6.38e-82 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gabi4044g00009 Pkinase 2.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00009 - - vra:106764755 589.341