Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00007 ATGGCCAGACCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGGCACCCTATATTGAAAACTAGGATATGGCTTGGTACTTTTGAAACTGCTGAGGATGCTGCTAGAGCCTATGATGAAGCAGCGAGGCTAATGGGTGGTACAAGAGCAAGAACAAACTTCCCTTACAACCCCAATGGGTCTCAATCTTCATCTTCGAAGCTTCTTTCAGCAACTTTGACCGCTAAACTTCATAGGTGTTATATGGCTTCGTTGCAAATGACTAGGCCATCACTTCCAGAGCCTCAGAGAATTACTTCACCAAATGTGATCTCAACAAGCAACTTTCCCATGAAAAGTAGCGAGACTGATATAATGTTGCCACAAAAGAGACAACAGGAGGAGAAAGAATCAGAGGGGAATTGGGTTTTCAAGAAGGTTAAACTGGAAAGTGATCAGCAATTCAAGCCTCTTGAAGAAGATCATATAGAGCAAATGATAGAAGAACAACATATAGAGCAAATGATAGAGGAGCTTCTTCATTATGGGTCTATTGAGCTCTGCTCTGTTATTCCACAACAAGCTCATTGA 597 0.4305 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMGGTRARTNFPYNPNGSQSSSSKLLSATLTAKLHRCYMASLQMTRPSLPEPQRITSPNVISTSNFPMKSSETDIMLPQKRQQEEKESEGNWVFKKVKLESDQQFKPLEEDHIEQMIEEQHIEQMIEELLHYGSIELCSVIPQQAH 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00007 198 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Gabi4044g00007 198 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Gabi4044g00007 198 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Gabi4044g00007 198 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Gabi4044g00007 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 136 - -
Gabi4044g00007 198 Pfam AP2 domain 7 54 IPR001471 GO:0003700|GO:0006355
Gabi4044g00007 198 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Gabi4044g00007 198 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Gabi4044g00007 198 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Gabi4044g00007 198 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Gabi4044g00007 198 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00007 Gabi-Chr4044 69539 70471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00007 1 196 AP2-EREBP Transcription Factor Family AT5G25190 63.776 3.72e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi4044g00007 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00007 - - gmx:100804510 294.278