Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4044g00002 ATGAATCAACAAGGAAATTACTCTGCAATGAAAACACTGAGTCACGTGCCTTATCACCACCGTGATAACCTAAGTATCCTCTCTTCTCGAGAGGCTCCTCCAAGTCCAAGTACACCATCGCAGAATCCACGGGAAAAGAAACTGCAAACTGCAGAGGAAGAAGAAGAAGAAGAAGAAAAGAAGGAAACAAAGACAGATACTTTATTGGATCTGAATGTCCCTGGCGATGAATCTGCTATTGGGTGCAGTCAACAGCACAATCTCATCAACTTTTCGGACATGGATTTGTCCAAGACTTCATTAGAAAGCCCTTCTGGTTCTGAAGCAGAGCCACGAGTCTTTTCTTGCAACTTCTGCCAGAGAAAGTTCTACAGTTCTCAAGCGCTTGGGGGACACCAAAATGCTCACAAGAGAGAGAGGTCAATAGCGAAAAGAGGTCAGAGGTTAGGAACAGCCTTTGGGGTTCCCTATCTTCATAATCACCTTCACCGCTATGCGAGTATGGCGTCTCTACCCCTCCATGGTGCTTGTAGTAATAGACCACTTGGAATTAAGGCTCATTCGATGGTTCAGAAGCCTTCTCATCATTTTTCATCCAATGGATTTGGAAGCACTTATGGACATCATGGTTGGTCAAGACCCCTTATTGATCAACAACCTCGAATAGGGAAGCTAGCCATGGAAACTTTCCACAAAAGAGAATTATCATCACGAGGCAGTACTGTTGGTAAATTCCAAATGGTAAACACTACCATGCTCAATTCATCAGCCAATGAAGATATCAGCGGAAATCTTGTTAGTGAAACTCGTTTGAAGACTGACCAAGAAGAAATTAAGCACCTTGACTTATCCCTGAAGCTCTAA 864 0.434 MNQQGNYSAMKTLSHVPYHHRDNLSILSSREAPPSPSTPSQNPREKKLQTAEEEEEEEEKKETKTDTLLDLNVPGDESAIGCSQQHNLINFSDMDLSKTSLESPSGSEAEPRVFSCNFCQRKFYSSQALGGHQNAHKRERSIAKRGQRLGTAFGVPYLHNHLHRYASMASLPLHGACSNRPLGIKAHSMVQKPSHHFSSNGFGSTYGHHGWSRPLIDQQPRIGKLAMETFHKRELSSRGSTVGKFQMVNTTMLNSSANEDISGNLVSETRLKTDQEEIKHLDLSLKL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4044g00002 287 MobiDBLite consensus disorder prediction 1 69 - -
Gabi4044g00002 287 Coils Coil 44 66 - -
Gabi4044g00002 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 114 141 IPR013087 -
Gabi4044g00002 287 MobiDBLite consensus disorder prediction 28 45 - -
Gabi4044g00002 287 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Gabi4044g00002 287 FunFam Zinc finger protein 2 91 159 - -
Gabi4044g00002 287 Gene3D Classic Zinc Finger 91 152 - -
Gabi4044g00002 287 ProSitePatterns Zinc finger C2H2 type domain signature. 116 136 IPR013087 -
Gabi4044g00002 287 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 35 287 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4044g00002 Gabi-Chr4044 11653 12820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4044g00002 50 287 C2H2 Transcription Factor Family AT5G10970 41.502 2.97e-44 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4044g00002 - - gmx:100783199 340.887