Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4037g00004 ATGGAACAAAATGGTGGAGTGGTAGCTGGGTTGCGTGAAAGGAATGAACTTGTTCAAGTTAGGCACGGTTCGGATACTGAGTCTAAACCCCTAAAGAATTTGAACGGTCAAACCTGTCAGATATGTAGTGATACTGTTGGATTAACAGTCAGTGGGGATGTCTTGATTGCTTGCCACGAGTGTGCCTTCCCACTTTGTCATTCTTGTTATGAATATGAGCGAAAAAATGCGAGCCAATCCTGTCTTCATTGCAAGACTAGATACAAAATTGAAAAAGATAGTCCTCGATTGGAGGGAGATGATGACAATGATGATGATGTTGATGATCTAGAGAATGAGTTCAACTATGGCCAAGGAAATAATACCAATGCAGGGATGCAATGGGAAGAAGATGCTGACCTCTCGTCATCTTCAGGACATGATTCTCAAATACCGAATGCCCATCTTACAAACGGACAGCAGATGTCTGGTGAGATTCCATGTGCTATTCCTGATACTCAATCTGCGCTAACTACGTCAGGTCCTTTGGGTCAATCTGAAAAGATTCGGTTGCTTCCCAACGTTGATGCAAAGAAACCGGTTCTTGAGAGTGATGAAGAGATCCGAAGAGTGCCAGAGATTGGAGGTGAATCTGCTGGAACTTCAGCCTCTCGTCCAAACACTGGTTCAACTGCTGGTCCGGATCGTGTTAAGGGGACAGGAGAGGGTCAGAGGAAGAGAGGGAGAAGCCCGGCTGACAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAACAGAGTCTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACATGATTGATTTGGAAACAAAAGTCAAAGACTTAGAGAAGAAGAATTCAGAGCTCAAAGAGAGACTTTCAACTTTGCAGAATGAGAATCAAATGCTGAGACAAATATTAAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 981 0.4414 MEQNGGVVAGLRERNELVQVRHGSDTESKPLKNLNGQTCQICSDTVGLTVSGDVLIACHECAFPLCHSCYEYERKNASQSCLHCKTRYKIEKDSPRLEGDDDNDDDVDDLENEFNYGQGNNTNAGMQWEEDADLSSSSGHDSQIPNAHLTNGQQMSGEIPCAIPDTQSALTTSGPLGQSEKIRLLPNVDAKKPVLESDEEIRRVPEIGGESAGTSASRPNTGSTAGPDRVKGTGEGQRKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYMIDLETKVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 114 160 - -
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 94 160 - -
Gabi4037g00004 326 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700|GO:0006355
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 165 184 - -
Gabi4037g00004 326 SUPERFAMILY RING/U-box 23 107 - -
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 196 268 - -
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 213 227 - -
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 98 112 - -
Gabi4037g00004 326 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 311 IPR004827 GO:0003700|GO:0006355
Gabi4037g00004 326 Pfam bZIP transcription factor 247 308 IPR004827 GO:0003700|GO:0006355
Gabi4037g00004 326 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 167 323 IPR044280 GO:0000981|GO:0045944
Gabi4037g00004 326 MobiDBLite consensus disorder prediction 232 268 - -
Gabi4037g00004 326 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Gabi4037g00004 326 CDD mRING-HC-C4C4_CesA 37 87 - -
Gabi4037g00004 326 Gene3D Single helix bin 269 310 - -
Gabi4037g00004 326 SMART brlzneu 246 310 IPR004827 GO:0003700|GO:0006355
Gabi4037g00004 326 SUPERFAMILY Leucine zipper domain 250 308 IPR046347 GO:0003700|GO:0006355
Gabi4037g00004 326 Coils Coil 245 314 - -
Gabi4037g00004 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Gabi4037g00004 326 CDD bZIP_HY5-like 251 302 - -
Gabi4037g00004 326 FunFam Transcription factor HY5 269 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4037g00004 Gabi-Chr4037 46654 49813 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4037g00004 1 194 Glycosyltransferase AT4G32410 54.359 1.96e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gabi4037g00004 zf-UDP 7.9e-34 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4037g00004 K10999 - aprc:113855639 527.709