Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00078 ATGGATGAAGTGATGGAGTTGAAGGAGACACAGCAAGAGCGTAACAGGAATGACAACGATGGTGGTGATCGCTCAGTTGAAGTGGTTAAGTGGGAGAGGTTTCTGCCACGGATGATGCTGAGAGTGCTGCTTGTCGAATCTGATCATTCTACTCGCCAGATCATCACTGCGCTTCTCAAGAAATGCAGTTACAAAGTTACTGCAGTTCCTGATGGATTAAAGGCATGGGAGATGTTGAAGAGGAAGGGATCTAACATAGATCTCATATTAACAGAAGTGGAGTTGCCGGCAATATCTGGATTTGCACTTCTGTCTTTTATCATGGAGCATGACATTTGCAAAAACATTCCCGTTATTATGATGTCTTCTCACGATTCGGTTAGCATGGTGTTGAAATGCATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGGAGGAATGAGCTTAGGAACTTGTGGCATCATGTTTGGAGAAAGCATGGTATTAGAGGGCTTTCTCAAAATACACTATTTCCACAAAAAAAACTTAAATCTGCCACAGAAGACAATTCTGCAATCAATCAATCTAGTGGTTCTGCGGCTTCCTCACAGAAAAATAATGAATGCATCGAGAAGTTGAGCGAGGCTCAAAGCACCTGTACATCGCCATTTTTGGAAGCTGAGAGTGCAAGCATGGAGAATATGCAGGATGCATCCCTGCTGAAGAGCTCTTCGATATTGAGCAACATTGATATGATGATGCATGAAGAATTTACCAATTTTGAAAGTGAATCAACTAGGCATAATGAGAAATCAATTGCATTTGCATCTGAGGCTGAAAGGTGCAACAAAACTTTTAAATTAACAGATTTATGGCTAGAACAAGATCATGGCTGTGCTGAATCCGAAAGAAAAGATGAAATTTTAACAGATGAGTTAAACAGAGACAATCCTAATATGAATACCGAGGCACATGGATGCAGTGATGAACGGGTAAAACCTTCTAGAGCAGCTAACTTGATTGCCACATTTGAGAATCTTCCAAAGCACACTAATGAAAAGTGTAGTCTCGACCGTGGTAGCACAACCAAGTTTGATTTTGATACACAATTGGGACTTTCTTTAAGAAGGGATTGTCCTGGCAGCTCATGTAAACAAGCAAGTGAAGCAACTGAGGAGTGCCAAAGATTGAACCATTCAAATACTTCTGCCTTTTCTTGGTATAGTGGTTGTAAGTTGTTTAAGCCCCTTTTTCCAACTCCACCAATTACATCTGCCAAAGTAAACAACACCAATTGGGATTCTCAAGAATACCATAAATTACCTGAAATTACTGCTGGTAATTGTTGTCAGTATGGTGGCTCAAATCAAAAGCAGGAAAATATGACCACTACAGTCCTTGGTCGGTGTGGACAAGTTACACCAAATATATCTCACAGACAATATGGACCCTTACCTGTTATTGGAGTTACTTCCAATCTTAAGCCTAAGGGACATATTAAAGTTTTTACTTCTGTGTTCTGTGAACAATCTGGTGTTCATCCCATATGGAATCAAAAACCAGTGTGCCAGAAAGAGAGTTCTCCCTTTCCCACAAGTACATCCTCCCATTCCAATCCTGAAAGTCACAACTCAGACCAACATCATCACTGGTCCGATGATGCTACCTGTACCTCACTTAAACAAAATTTAAATGATAAAAGCAATTTGGATCATGTAAGGCATGATTCTCCTGCTGCTGGTCAGAATGCTGATACTAGTTTATGCCATGATGCTGCAAATCTTATTAATAGTATTGCATATGGAAGCATAGGCAGTGGAAATGACGGAAATGCTACTTCACCTATGGTAGCCATGAACGACCCTGAAAATTTTAGTGATAGTGGTTGCCATTATTATGATGGATTTAGATTGACAAATTCTCGTTGCTCCAGTCATAGAGATGCAGCTCTAACAAAGTTTCGACTGAAGCGGAAAGGGAGATGCTACGAGAAAAAGGTTCGATATCAAAGCAGGAAAAGACTGGCAGAGCAGCGCCCTCGGGTGAAAGGGCAGTTTGTACGCCAAGTATACAATGATCATCCAGTCCCTTTTGCTGGTGGTGATTCCTGA 2097 0.4082 MDEVMELKETQQERNRNDNDGGDRSVEVVKWERFLPRMMLRVLLVESDHSTRQIITALLKKCSYKVTAVPDGLKAWEMLKRKGSNIDLILTEVELPAISGFALLSFIMEHDICKNIPVIMMSSHDSVSMVLKCMLKGAADFLIKPVRRNELRNLWHHVWRKHGIRGLSQNTLFPQKKLKSATEDNSAINQSSGSAASSQKNNECIEKLSEAQSTCTSPFLEAESASMENMQDASLLKSSSILSNIDMMMHEEFTNFESESTRHNEKSIAFASEAERCNKTFKLTDLWLEQDHGCAESERKDEILTDELNRDNPNMNTEAHGCSDERVKPSRAANLIATFENLPKHTNEKCSLDRGSTTKFDFDTQLGLSLRRDCPGSSCKQASEATEECQRLNHSNTSAFSWYSGCKLFKPLFPTPPITSAKVNNTNWDSQEYHKLPEITAGNCCQYGGSNQKQENMTTTVLGRCGQVTPNISHRQYGPLPVIGVTSNLKPKGHIKVFTSVFCEQSGVHPIWNQKPVCQKESSPFPTSTSSHSNPESHNSDQHHHWSDDATCTSLKQNLNDKSNLDHVRHDSPAAGQNADTSLCHDAANLINSIAYGSIGSGNDGNATSPMVAMNDPENFSDSGCHYYDGFRLTNSRCSSHRDAALTKFRLKRKGRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVYNDHPVPFAGGDS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00078 698 Gene3D - 38 299 - -
Gabi4033g00078 698 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4033g00078 698 CDD psREC_PRR 42 145 - -
Gabi4033g00078 698 SMART REC_2 40 155 IPR001789 GO:0000160
Gabi4033g00078 698 Pfam Response regulator receiver domain 42 153 IPR001789 GO:0000160
Gabi4033g00078 698 ProSiteProfiles CCT domain profile. 642 684 IPR010402 GO:0005515
Gabi4033g00078 698 MobiDBLite consensus disorder prediction 516 536 - -
Gabi4033g00078 698 MobiDBLite consensus disorder prediction 514 548 - -
Gabi4033g00078 698 Pfam CCT motif 642 684 IPR010402 GO:0005515
Gabi4033g00078 698 SUPERFAMILY CheY-like 39 162 IPR011006 -
Gabi4033g00078 698 ProSiteProfiles Response regulatory domain profile. 41 159 IPR001789 GO:0000160
Gabi4033g00078 698 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 354 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00078 Gabi-Chr4033 707971 712483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00078 629 685 Response Regulator Gene Family AT5G24470 71.186 3.89e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gabi4033g00078 Response_reg 6.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00078 K12130 - gmx:100791698 872.078