Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00075 ATGGAGAGGCTTCAAGGACCCTTCAATTCCTGTTTCTTTGGTGAGCATTTTGAAGTGAATTGTTTGGAGCAAGGTTTTGTAGATGCAGAAAGCTTGAGACTTGAGGAGGAAGAACAACTTCTGATATCAAATTTAGAGGATAACATGCCATTCCTGCAGATGCTTCAGAGTGTGGAATACCCAGAGTTTTTCCCTTTGAAAGAACCAAGCTTTCAAACACTTCTGAGGCTGCAGCACCTGAAGAAACCATGGGAAGGGATAGCATATATTCCCACAATGGAGACACAAGTTCAATCAACAATGGAGCTTGAGAGCTGCGTGACTCATGACATGTTGGAGATGCAGTCACCAATGAAATCCGAAAGCAACGAGCTTCAACAACACCCACGTTCAGTTTCATGTGTTGAGAAAGTGAACTATGAGTGCAACCAGGAACCGATAGAAACAGTTAACAACTCACAGTCATGCTCCAAATCTCAGCTAGTCACAAGGGAAAGGAGAAAGCGAAAGAGAACTAGACCAACCAAGAACAAGGAAGACATGGAGAATCAACGCATGACTCACATTGCTGTTGAACGAAACCGAAGACGCCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTGATGCCCGCTTCCTATATTCAAAGGGGTGACCAAGCTTCAATAATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAATTGCTTCAATCACTTGAAGCACAAAAAAAGATAAGAAAGAATGAAGAGGTTGGTTATTCCAGTAGGTCTTCTAAGCCATCATCATCATTGTCTGGTTATGGATTAAGGTCATCAACATCAACTGAAGAAGTAAATTGTGGGGATGAGGTGAAAGCAGAAAACAAGTCAGATGAAGCAGACATAAAGGTTACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGAAGGCCAGGGCAATTGATAAAGGTAATTGTTGCTTTGGAGGATCTTAGGCTAACCATTCTGCACCTCAACATCACCTCATATGAGGCTTCTGTCATGTACTCGCTTAACCTCAAGATTGAAGAAGACTGTAAGCTAGGATCAGCAAATGACATTGCAGAAGCAGTTCATCACATATTTAGATTCATTAATGGTTAG 1137 0.4178 MERLQGPFNSCFFGEHFEVNCLEQGFVDAESLRLEEEEQLLISNLEDNMPFLQMLQSVEYPEFFPLKEPSFQTLLRLQHLKKPWEGIAYIPTMETQVQSTMELESCVTHDMLEMQSPMKSESNELQQHPRSVSCVEKVNYECNQEPIETVNNSQSCSKSQLVTRERRKRKRTRPTKNKEDMENQRMTHIAVERNRRRQMNDHLSVLRSLMPASYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKKIRKNEEVGYSSRSSKPSSSLSGYGLRSSTSTEEVNCGDEVKAENKSDEADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSYEASVMYSLNLKIEEDCKLGSANDIAEAVHHIFRFING 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00075 378 MobiDBLite consensus disorder prediction 249 287 - -
Gabi4033g00075 378 MobiDBLite consensus disorder prediction 256 281 - -
Gabi4033g00075 378 SMART finulus 189 240 IPR011598 GO:0046983
Gabi4033g00075 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 182 253 IPR036638 GO:0046983
Gabi4033g00075 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 234 IPR011598 GO:0046983
Gabi4033g00075 378 PANTHER TRANSCRIPTION FACTOR FAMA 109 373 IPR044283 GO:0003700|GO:0010052
Gabi4033g00075 378 MobiDBLite consensus disorder prediction 151 181 - -
Gabi4033g00075 378 Pfam Helix-loop-helix DNA-binding domain 184 235 IPR011598 GO:0046983
Gabi4033g00075 378 Gene3D - 174 251 IPR036638 GO:0046983
Gabi4033g00075 378 Coils Coil 231 251 - -
Gabi4033g00075 378 CDD bHLH_AtFAMA_like 186 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00075 Gabi-Chr4033 664145 666271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00075 54 373 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46810 43.855 1.47e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4033g00075 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00075 - - gmx:100789928 572.392