Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi4033g00075 | ATGGAGAGGCTTCAAGGACCCTTCAATTCCTGTTTCTTTGGTGAGCATTTTGAAGTGAATTGTTTGGAGCAAGGTTTTGTAGATGCAGAAAGCTTGAGACTTGAGGAGGAAGAACAACTTCTGATATCAAATTTAGAGGATAACATGCCATTCCTGCAGATGCTTCAGAGTGTGGAATACCCAGAGTTTTTCCCTTTGAAAGAACCAAGCTTTCAAACACTTCTGAGGCTGCAGCACCTGAAGAAACCATGGGAAGGGATAGCATATATTCCCACAATGGAGACACAAGTTCAATCAACAATGGAGCTTGAGAGCTGCGTGACTCATGACATGTTGGAGATGCAGTCACCAATGAAATCCGAAAGCAACGAGCTTCAACAACACCCACGTTCAGTTTCATGTGTTGAGAAAGTGAACTATGAGTGCAACCAGGAACCGATAGAAACAGTTAACAACTCACAGTCATGCTCCAAATCTCAGCTAGTCACAAGGGAAAGGAGAAAGCGAAAGAGAACTAGACCAACCAAGAACAAGGAAGACATGGAGAATCAACGCATGACTCACATTGCTGTTGAACGAAACCGAAGACGCCAAATGAATGACCATCTCAGTGTTCTAAGGTCCCTGATGCCCGCTTCCTATATTCAAAGGGGTGACCAAGCTTCAATAATTGGAGGTGCAATAGATTTTGTGAAGGAGTTGGAGCAATTGCTTCAATCACTTGAAGCACAAAAAAAGATAAGAAAGAATGAAGAGGTTGGTTATTCCAGTAGGTCTTCTAAGCCATCATCATCATTGTCTGGTTATGGATTAAGGTCATCAACATCAACTGAAGAAGTAAATTGTGGGGATGAGGTGAAAGCAGAAAACAAGTCAGATGAAGCAGACATAAAGGTTACCTTGATTCAAACCCATGTGAACTTGAAAATTGAGTGCCAAAGAAGGCCAGGGCAATTGATAAAGGTAATTGTTGCTTTGGAGGATCTTAGGCTAACCATTCTGCACCTCAACATCACCTCATATGAGGCTTCTGTCATGTACTCGCTTAACCTCAAGATTGAAGAAGACTGTAAGCTAGGATCAGCAAATGACATTGCAGAAGCAGTTCATCACATATTTAGATTCATTAATGGTTAG | 1137 | 0.4178 | MERLQGPFNSCFFGEHFEVNCLEQGFVDAESLRLEEEEQLLISNLEDNMPFLQMLQSVEYPEFFPLKEPSFQTLLRLQHLKKPWEGIAYIPTMETQVQSTMELESCVTHDMLEMQSPMKSESNELQQHPRSVSCVEKVNYECNQEPIETVNNSQSCSKSQLVTRERRKRKRTRPTKNKEDMENQRMTHIAVERNRRRQMNDHLSVLRSLMPASYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKKIRKNEEVGYSSRSSKPSSSLSGYGLRSSTSTEEVNCGDEVKAENKSDEADIKVTLIQTHVNLKIECQRRPGQLIKVIVALEDLRLTILHLNITSYEASVMYSLNLKIEEDCKLGSANDIAEAVHHIFRFING | 378 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi4033g00075 | 378 | MobiDBLite | consensus disorder prediction | 249 | 287 | - | - | |
Gabi4033g00075 | 378 | MobiDBLite | consensus disorder prediction | 256 | 281 | - | - | |
Gabi4033g00075 | 378 | SMART | finulus | 189 | 240 | IPR011598 | GO:0046983 | |
Gabi4033g00075 | 378 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 182 | 253 | IPR036638 | GO:0046983 | |
Gabi4033g00075 | 378 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 183 | 234 | IPR011598 | GO:0046983 | |
Gabi4033g00075 | 378 | PANTHER | TRANSCRIPTION FACTOR FAMA | 109 | 373 | IPR044283 | GO:0003700|GO:0010052 | |
Gabi4033g00075 | 378 | MobiDBLite | consensus disorder prediction | 151 | 181 | - | - | |
Gabi4033g00075 | 378 | Pfam | Helix-loop-helix DNA-binding domain | 184 | 235 | IPR011598 | GO:0046983 | |
Gabi4033g00075 | 378 | Gene3D | - | 174 | 251 | IPR036638 | GO:0046983 | |
Gabi4033g00075 | 378 | Coils | Coil | 231 | 251 | - | - | |
Gabi4033g00075 | 378 | CDD | bHLH_AtFAMA_like | 186 | 254 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi4033g00075 | Gabi-Chr4033 | 664145 | 666271 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi4033g00075 | 54 | 373 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT2G46810 | 43.855 | 1.47e-70 | 222 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Gabi4033g00075 | HLH | 3e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi4033g00075 | - | - | gmx:100789928 | 572.392 |