Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00059 ATGGATTTCGGAGGCCCCACCATGACCCGTTTGATCGGGGATTACATACTGGGTCCTCGAATCGGGTCGGGTTCATTCGCGGTGGTGTGGCTTTCAAGGCATCGACGCTCGGGTTTGGAGTTTGCGGTGAAGGAGATTGATACGAGGCATATGAGTCCCAAAGTCAGAGAGAATCTGCGAAAAGAGATTTCTATTCTTAGCACTATCAATCACCCTAACATCACTCGACTCTTCGAAGCAATTGAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGGTGGTGGGGACCTTGCTGCTTACATTCATCGCCATGGCAAAGTTTCAGAATCCATTGCTCGCCATTTCATGAGGCAATTGGCTTCTGGGTTGCAGGTGCTTCAAGAAAAGAACCTCATTCATAGGGATTTGAAACCACAGAACTTACTATTGGCAACTTCAGCAGCTACACCAGTTCTTAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGGGGTTGGCAGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATAATTCAATGTCAAAAGTATGATGCCAAGGCTGATTTATGGAGTGTTGGGGCAATATTGTATCAGCTAGTGATTGGGAGGCCGCCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAATATTTTGGCATGTACTGAACTGCACTTTCCACCAGAGGCTTTAAGAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAGCCTTTTACGTGGAAACCCGGATGAGAGATTAACATTCAAGGAGTTCTTCAATCACAATTTTCTACAGGAACCCAGGTCAATCGGGAATGTTGATCAGTTTCAATTACATCAATCAGAAAGATCAATGTCTCATCAATTAGTTAGCTCTGCCTCTGAGAAGAATTCTCAATCACATTCTGAGTATCATGTCGAGTCATCTGTAGATGATCCTGTGGTAGTCAGTTCAGCTGTCAATGAGACCATGCTGTTGCAAATGAAGGATTGCAAGATCACAGCTGGCACTAAGATTGTTAAAGGGTCAACTCCAAATATTGCAAGTGATAAGCAGGGGAAGCCTGTTGATGCAGTTGCTCATTTGTCAAACCAAACCAGAGTTTCCCATTTAATGGAGTCCATTGAGAAAGATTATGTCCTCGTAAATCCCCATTTTGCATCATTGGAGGCTTTCTCTGACTACTATGAGGCATCCATGCAAGATAAATTCTCAAGCAGGGTTACTATCTGTCCTTCAAAGAGGACTAACCTGGAAATTGAAGCTGCTAAGCAAACAAAGGATCCGTGCTCTTCCTCCACTGATGGATTAGGAAATGTAACAAGCAATGAACTTGAGGCATCAGTGTCATCCTGTGAATTTGCTGCCTTTAGGAAAGAGCAGGGAATTTCCTCACTGCACCCTTCAAACAGGTTAGAGTCGTTGCATCAGTATGTGCAGATCCTTGCAGAACTTTCGCAAGAAAAGTATAATACAGGACAGTATCTAGAGTCGCTTGCAGTTGAGTTGGTGGTTTTGGCTATATGGAAGAAAGCTCTAGAAATTTGTAGCTCTTGGTTAGCCTCCATTAGTGAGGGTGAGTTGCCTGGAAGCAGTTCAGCTAATGAATCCATATTGGCAAGTGGAGATGTGGGCTTGTCACAGACCATGGAACAACAGAACATAAATTTCAGTGATCCTACATCTGTTTCCTTGTGGGCCAAATATGGGTTTATTGTTGCAGTTGAGCATGCTGACAAACTATCATGTCATATTCAAAATATGGATGGGGCAGCCGAGATGCCAGATGCAATGGAGATTATATTCCGACAAGCACTTATATTCGGGACAAGTGGTGCTGTAGATGAGTATATGGAGAACAGAGACAGGGCTGCTGCATCTTACTCAAAAGCGATTCTTCTACTTTCATTTATTGTGGGAGAAGCAGAGAACCTTCCACTTAACCCACCTTTTTCACTTCTTGAAACTGATAAGAAACGAATCTTAAAATATATTCTCATCTTGCAGTCTCGTAAAAAATCTTCGTCACAGTCCTCTTCAAAGGAAGCTTGCACTCTTTCATCGAAGTAA 2097 0.4287 MDFGGPTMTRLIGDYILGPRIGSGSFAVVWLSRHRRSGLEFAVKEIDTRHMSPKVRENLRKEISILSTINHPNITRLFEAIETNDRIYLVLEYCGGGDLAAYIHRHGKVSESIARHFMRQLASGLQVLQEKNLIHRDLKPQNLLLATSAATPVLKIGDFGFARSLTPQGLADTLCGSPYYMAPEIIQCQKYDAKADLWSVGAILYQLVIGRPPFDGNSQLQLFQNILACTELHFPPEALRELHSDCLDLCRSLLRGNPDERLTFKEFFNHNFLQEPRSIGNVDQFQLHQSERSMSHQLVSSASEKNSQSHSEYHVESSVDDPVVVSSAVNETMLLQMKDCKITAGTKIVKGSTPNIASDKQGKPVDAVAHLSNQTRVSHLMESIEKDYVLVNPHFASLEAFSDYYEASMQDKFSSRVTICPSKRTNLEIEAAKQTKDPCSSSTDGLGNVTSNELEASVSSCEFAAFRKEQGISSLHPSNRLESLHQYVQILAELSQEKYNTGQYLESLAVELVVLAIWKKALEICSSWLASISEGELPGSSSANESILASGDVGLSQTMEQQNINFSDPTSVSLWAKYGFIVAVEHADKLSCHIQNMDGAAEMPDAMEIIFRQALIFGTSGAVDEYMENRDRAAASYSKAILLLSFIVGEAENLPLNPPFSLLETDKKRILKYILILQSRKKSSSQSSSKEACTLSSK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00059 698 CDD STKc_ATG1_ULK_like 21 272 - -
Gabi4033g00059 698 Gene3D Transferase(Phosphotransferase) domain 1 6 349 - -
Gabi4033g00059 698 SMART serkin_6 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4033g00059 698 SUPERFAMILY Protein kinase-like (PK-like) 11 322 IPR011009 -
Gabi4033g00059 698 FunFam Serine/threonine-protein kinase ATG1 7 316 - -
Gabi4033g00059 698 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Gabi4033g00059 698 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4033g00059 698 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4033g00059 698 MobiDBLite consensus disorder prediction 296 318 - -
Gabi4033g00059 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Gabi4033g00059 698 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 10 570 IPR045269 GO:0004674|GO:0006914
Gabi4033g00059 698 FunFam Non-specific serine/threonine protein kinase 5 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00059 Gabi-Chr4033 568824 578687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00059 5 304 CBL-interacting serine-threonine protein kinases AT2G30360 35.179 8.76e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Gabi4033g00059 Pkinase 4.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00059 - K08269 gmx:100779262 1036.17