Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00056 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAAGAAGAAGAGGAAGAGGAAACAGCAGAAGAGATTATAACAAGAGAAGAAAGCAGTGGCAGTAAGCACAACTACCCCTTTTCTTCACCCTCTTTCTCTTCTTCTCCTTCATTAACAAATTATACATTACATCCTCATCATCATCATCATCCAGAGGAGGGTATCACTGCTATTGAATCTCACAATTCATCATCTGGGCTAGGGTTATTACACCAGCACCAAGATGTAGCAGCTTCTTCCAATTTCACCAATAGTCACACAAAGCAGCTAGACTTCATGGAGTTATCACTTGGGAACAATAACAACAAAGATGTTAGTGATGAAGCCAATTTCCAAGGATCAGGAGGAGTTGTTCCACCTCCTAATCCTGCTGGTTATGGCCATGCAAGTGCTGGTTCTTCTTCTTCTTCCAACAACAACAACCATCCAACTGAGAAAGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTAGGGAAGCTGAACCGTTTGGTGATACCAAAACAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAACAAATGAGAAAGGTTTGCTCCTCAATTTTGAAGACAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCATATTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTTGATGCTGGTGATGTTGTGTCGTTTCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTTCATAGATTGGAGGAGAAGACCTGATCATGGCCCTGATCCATCAACAACACTCTTCACACCTTTCTTTCTTCCAAATCAGCCACACTTGTCACAGTACTCTATTAGATGGGGTGGAACTGGAAGATTGTACTCCTTGCCTTCACCACAGGCACCAAGGAACCATAACCATTTGCAGCAGCAGCTCAATTACAACAACAATATGTATCCCTTTCAGCATCAACAACAGCACCACCATGGTGGTGGAACTCCTCACTACAACAACTACAATGAACTGAGTTCAGGATCTGGCTCGGTCTATTACTTGAGGTCAACCCCATCAATGCCAAGGGGTGATCAAAGCTTGACAAGGCAACGACAACAAGAGGGAGGGAATATTTCCCCCATGATCATTGATTCTGTTCCTGTTGCTCACCATCATCAGCAGCATCATCATCATCATCACCATGGTGTTAAGAGTGGTTCAAGTAGTAGTAGTAGTAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTTCACCATCAGAAGACCCCAAATGTTGCAGCTTATTGTCCTCAACTTCGGTAGCACATGTGACAATGGCTAATTCACTTCCCTCTTCTTCTCTACCACCTCTTCAGCTTTTGAGGGTACCCCATGAAGACACACTACTCTCACCATCAACAAGGTTTGGAGATCAAAGAGGGGAAGCTTCAATGCTTTTTGATTTGGACCCTTCTTTGCAATACCGGCAGTGA 1542 0.4364 MELMQEVKGYSDSREEEEEEETAEEIITREESSGSKHNYPFSSPSFSSSPSLTNYTLHPHHHHHPEEGITAIESHNSSSGLGLLHQHQDVAASSNFTNSHTKQLDFMELSLGNNNNKDVSDEANFQGSGGVVPPPNPAGYGHASAGSSSSSNNNNHPTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGVGELYRHRLFIDWRRRPDHGPDPSTTLFTPFFLPNQPHLSQYSIRWGGTGRLYSLPSPQAPRNHNHLQQQLNYNNNMYPFQHQQQHHHGGGTPHYNNYNELSSGSGSVYYLRSTPSMPRGDQSLTRQRQQEGGNISPMIIDSVPVAHHHQQHHHHHHHGVKSGSSSSSSKRLRLFGVNMECASSSSSSSPSEDPKCCSLLSSTSVAHVTMANSLPSSSLPPLQLLRVPHEDTLLSPSTRFGDQRGEASMLFDLDPSLQYRQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00056 513 CDD B3_DNA 162 251 IPR003340 GO:0003677
Gabi4033g00056 513 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 443 IPR044800 GO:0003700
Gabi4033g00056 513 MobiDBLite consensus disorder prediction 398 421 - -
Gabi4033g00056 513 SUPERFAMILY DNA-binding pseudobarrel domain 160 268 IPR015300 -
Gabi4033g00056 513 MobiDBLite consensus disorder prediction 364 386 - -
Gabi4033g00056 513 Gene3D - 158 273 IPR015300 -
Gabi4033g00056 513 MobiDBLite consensus disorder prediction 1 64 - -
Gabi4033g00056 513 MobiDBLite consensus disorder prediction 33 56 - -
Gabi4033g00056 513 MobiDBLite consensus disorder prediction 113 159 - -
Gabi4033g00056 513 Pfam B3 DNA binding domain 164 268 IPR003340 GO:0003677
Gabi4033g00056 513 SMART B3_2 164 269 IPR003340 GO:0003677
Gabi4033g00056 513 ProSiteProfiles B3 DNA-binding domain profile. 164 269 IPR003340 GO:0003677
Gabi4033g00056 513 MobiDBLite consensus disorder prediction 142 157 - -
Gabi4033g00056 513 FunFam B3 domain-containing protein 157 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00056 Gabi-Chr4033 499971 502661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00056 158 436 RAV Transcription Factor Family AT2G46870 49.822 1.50e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4033g00056 B3 2.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00056 K09287 - gmx:100781424 504.982