Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00055 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAAGAAGAAGAGGAAGAGGAAACAGCAGAAGAGATTATAACAAGAGAAGAAAGCAGTGGCAAGGAGGGTATCACTGCTATTGAATCTCACAATTCATCATCTGGGCTAGGGTTATTACACCAGCACCAAGATGTAGCAGCTTCTTCCAATTTCACCAATAGTCACACAAAGCAGCTAGACTTCATGGAGTTATCACTTGGGAACAATAACAACAAAGATGTTAGTGATGAAGCCAATTTCCAAGGATCAGGAGGAGTTGTTCCACCTCCTAATCCTGCTGGTTATGGCCATGCAAGTGCTGGTTCTTCTTCTTCTTCCAACAACAACAACCATCCAACTGAGAAAGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTAGGGAAGCTGAACCGTTTGGTGATACCAAAACAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAACAAATGAGAAAGGTTTGCTCCTCAATTTTGAAGACAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCATATTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTTGATGCTGGTGATGTTGTGTCGTTTCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTTCATAGATTGGAGGAGAAGACCTGATCATGGCCCTGATCCATCAACAACACTCTTCACACCTTTCTTTCTTCCAAATCAGCCACACTTGTCACAGTACTCTATTAGATGGGGTGGAACTGGAAGATTGTACTCCTTGCCTTCACCACAGGCACCAAGGAACCATAACCATTTGCAGCAGCAGCTCAATTACAACAACAATATGTATCCCTTTCAGCATCAACAACAGCACCACCATGGTGGTGGAACTCCTCACTACAACAACTACAATGAACTGAGTTCAGGATCTGGCTCGGTCTATTACTTGAGGTCAACCCCATCAATGCCAAGGGGTGATCAAAGCTTGACAAGGCAACGACAACAAGAGGGAGGGAATATTTCCCCCATGATCATTGATTCTGTTCCTGTTGCTCACCATCATCAGCAGCATCATCATCATCATCACCATGGTGTTAAGAGTGGTTCAAGTAGTAGTAGTAGTAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTTCACCATCAGAAGACCCCAAATGTTGCAGCTTATTGTCCTCAACTTCGGTAGCACATGTGACAATGGCTAATTCACTTCCCTCTTCTTCTCTACCACCTCTTCAGCTTTTGAGGGTACCCCATGAAGACACACTACTCTCACCATCAACAAGGTTTGGAGATCAAAGAGGGGAAGCTTCAATGCTTTTTGATTTGGACCCTTCTTTGCAATACCGGCAGTGA 1449 0.4403 MELMQEVKGYSDSREEEEEEETAEEIITREESSGKEGITAIESHNSSSGLGLLHQHQDVAASSNFTNSHTKQLDFMELSLGNNNNKDVSDEANFQGSGGVVPPPNPAGYGHASAGSSSSSNNNNHPTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGVGELYRHRLFIDWRRRPDHGPDPSTTLFTPFFLPNQPHLSQYSIRWGGTGRLYSLPSPQAPRNHNHLQQQLNYNNNMYPFQHQQQHHHGGGTPHYNNYNELSSGSGSVYYLRSTPSMPRGDQSLTRQRQQEGGNISPMIIDSVPVAHHHQQHHHHHHHGVKSGSSSSSSKRLRLFGVNMECASSSSSSSPSEDPKCCSLLSSTSVAHVTMANSLPSSSLPPLQLLRVPHEDTLLSPSTRFGDQRGEASMLFDLDPSLQYRQ 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00055 482 MobiDBLite consensus disorder prediction 111 126 - -
Gabi4033g00055 482 MobiDBLite consensus disorder prediction 1 49 - -
Gabi4033g00055 482 Gene3D - 127 242 IPR015300 -
Gabi4033g00055 482 SMART B3_2 133 238 IPR003340 GO:0003677
Gabi4033g00055 482 ProSiteProfiles B3 DNA-binding domain profile. 133 238 IPR003340 GO:0003677
Gabi4033g00055 482 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 412 IPR044800 GO:0003700
Gabi4033g00055 482 FunFam B3 domain-containing protein 126 247 - -
Gabi4033g00055 482 MobiDBLite consensus disorder prediction 82 128 - -
Gabi4033g00055 482 MobiDBLite consensus disorder prediction 367 390 - -
Gabi4033g00055 482 CDD B3_DNA 131 220 IPR003340 GO:0003677
Gabi4033g00055 482 Pfam B3 DNA binding domain 133 237 IPR003340 GO:0003677
Gabi4033g00055 482 SUPERFAMILY DNA-binding pseudobarrel domain 129 237 IPR015300 -
Gabi4033g00055 482 MobiDBLite consensus disorder prediction 334 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00055 Gabi-Chr4033 499971 502661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00055 127 405 RAV Transcription Factor Family AT2G46870 49.822 6.51e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4033g00055 B3 2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00055 K09287 - gmx:100778733 508.834