Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00054 ATGGAGTTGATGCAAGAAGTGAAAGGGTATTCTGATAGCAGAGAAGAAGAAGAGGAAGAGGAAACAGCAGAAGAGATTATAACAAGAGAAGAAAGCAGTGGCAGGTTATTACACCAGCACCAAGATGTAGCAGCTTCTTCCAATTTCACCAATAGTCACACAAAGCAGCTAGACTTCATGGAGTTATCACTTGGGAACAATAACAACAAAGATGTTAGTGATGAAGCCAATTTCCAAGGATCAGGAGGAGTTGTTCCACCTCCTAATCCTGCTGGTTATGGCCATGCAAGTGCTGGTTCTTCTTCTTCTTCCAACAACAACAACCATCCAACTGAGAAAGAGCACATGTTTGATAAAGTTGTGACACCAAGTGATGTAGGGAAGCTGAACCGTTTGGTGATACCAAAACAGCATGCTGAGAAGTATTTCCCTCTTGATTCCTCAACAAATGAGAAAGGTTTGCTCCTCAATTTTGAAGACAGGAATGGAAAGTTGTGGAGGTTCAGGTACTCATATTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGATGGAGCCGTTTTGTTAAGGAGAAGAAGCTTGATGCTGGTGATGTTGTGTCGTTTCAGCGTGGTGTTGGGGAATTGTATAGGCATAGGTTGTTCATAGATTGGAGGAGAAGACCTGATCATGGCCCTGATCCATCAACAACACTCTTCACACCTTTCTTTCTTCCAAATCAGCCACACTTGTCACAGTACTCTATTAGATGGGGTGGAACTGGAAGATTGTACTCCTTGCCTTCACCACAGGCACCAAGGAACCATAACCATTTGCAGCAGCAGCTCAATTACAACAACAATATGTATCCCTTTCAGCATCAACAACAGCACCACCATGGTGGTGGAACTCCTCACTACAACAACTACAATGAACTGAGTTCAGGATCTGGCTCGGTCTATTACTTGAGGTCAACCCCATCAATGCCAAGGGGTGATCAAAGCTTGACAAGGCAACGACAACAAGAGGGAGGGAATATTTCCCCCATGATCATTGATTCTGTTCCTGTTGCTCACCATCATCAGCAGCATCATCATCATCATCACCATGGTGTTAAGAGTGGTTCAAGTAGTAGTAGTAGTAAACGGCTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCTTCTTCTTCTTCTTCACCATCAGAAGACCCCAAATGTTGCAGCTTATTGTCCTCAACTTCGGTAGCACATGTGACAATGGCTAATTCACTTCCCTCTTCTTCTCTACCACCTCTTCAGCTTTTGAGGGTACCCCATGAAGACACACTACTCTCACCATCAACAAGGTTTGGAGATCAAAGAGGGGAAGCTTCAATGCTTTTTGATTTGGACCCTTCTTTGCAATACCGGCAGTGA 1401 0.4404 MELMQEVKGYSDSREEEEEEETAEEIITREESSGRLLHQHQDVAASSNFTNSHTKQLDFMELSLGNNNNKDVSDEANFQGSGGVVPPPNPAGYGHASAGSSSSSNNNNHPTEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGVGELYRHRLFIDWRRRPDHGPDPSTTLFTPFFLPNQPHLSQYSIRWGGTGRLYSLPSPQAPRNHNHLQQQLNYNNNMYPFQHQQQHHHGGGTPHYNNYNELSSGSGSVYYLRSTPSMPRGDQSLTRQRQQEGGNISPMIIDSVPVAHHHQQHHHHHHHGVKSGSSSSSSKRLRLFGVNMECASSSSSSSPSEDPKCCSLLSSTSVAHVTMANSLPSSSLPPLQLLRVPHEDTLLSPSTRFGDQRGEASMLFDLDPSLQYRQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00054 466 Gene3D - 111 226 IPR015300 -
Gabi4033g00054 466 MobiDBLite consensus disorder prediction 95 110 - -
Gabi4033g00054 466 SMART B3_2 117 222 IPR003340 GO:0003677
Gabi4033g00054 466 SUPERFAMILY DNA-binding pseudobarrel domain 113 221 IPR015300 -
Gabi4033g00054 466 ProSiteProfiles B3 DNA-binding domain profile. 117 222 IPR003340 GO:0003677
Gabi4033g00054 466 MobiDBLite consensus disorder prediction 66 112 - -
Gabi4033g00054 466 MobiDBLite consensus disorder prediction 351 374 - -
Gabi4033g00054 466 Pfam B3 DNA binding domain 117 221 IPR003340 GO:0003677
Gabi4033g00054 466 MobiDBLite consensus disorder prediction 1 36 - -
Gabi4033g00054 466 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 396 IPR044800 GO:0003700
Gabi4033g00054 466 FunFam B3 domain-containing protein 110 231 - -
Gabi4033g00054 466 CDD B3_DNA 115 204 IPR003340 GO:0003677
Gabi4033g00054 466 MobiDBLite consensus disorder prediction 318 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00054 Gabi-Chr4033 499971 502661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00054 111 389 RAV Transcription Factor Family AT2G46870 49.822 6.50e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gabi4033g00054 B3 1.9e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00054 K09287 - gmx:100778733 517.694