Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00053 ATGGTGAAAAGATTACTACCTTTGGGATATAGATTCCATCCATATGATCACGAGCTTGTTGGTCACTACCTGAAGCACAAGTTGCTTGGTGATGATTCAAGTGTGCACAATGAAATAGCTGAGGTTGATGTTTGCAAGTTTGAGCCTTGGGACTTACCAGCATATTCCAAGATAAAATCGGATGACCCAGTATGGTATTTCTTTAGTCCTCTTAGTTTGAAGTTCAGAAAAAGCACAAGGCGTAACAGGAAAACCAAGACTGGCTACTGGAAGGTCACTGGTAAAGACCGTAACATCAAGACACCTCACAGCAACAATGTTATTGGAACCAAGAAGACTCTGGTTTTCTATAAGAGTTGTGGTGGTCATCGTGTCAAGACCAATTGGGTTATACATGAATATCATGCAGTTACCTTTCCTGATGACAAGAGAGGTTATGTCTTGTGTCGCTTAAAGGAGAAAGCTGAGAAAAATGCAGAAGTTGGAACTGATTCATTGATACATGATGAAGGGGAGCCAAGTAGCCATATTATTGCTGACTATGAAAACCAACCAACCACAGATAGAATTCCAGATGTATATACTCCCCCAGAAGTGAATTTGGAATCAGTCTTTCTAACACTACCTCAATCAGGAGAATTTGACTTCTCCTCACTACAACAGTCTCCAATTGTCATTGAACAGGATCCATATTTCCAAGCTTCCACATTTCCCAATGCCTGTTTTGGGAACGAAAACAGCATTAAGCAGGCTCCATTTAAAACTACTGTAGATGAAGGCAATCTTGGGGAAATCAATGAGTTCTGGCATTCATTTATAATACCTTCTTTTGCTAATGATTCCACCCCCTCACAGTCTTTGAGAAAGGATTATCATGAAAGCTTTGAAACAGAAGCTGAACCACTATCTGCACGGCATGGAAATGTTCTGAACTCTACTTCAACAGTGTGTAATGAAGATACTGGTTCAAGGGAAAACCCAGTAATATCAATGGTGAAATCATCACATGATGCTGGCCCTTCTTCAGTATCATCTAAAAATGAAGTAAATCTAGAGAAAAAGGACAGTACCTTTGATGATAATTTCTGGGGAGAGGATGCTGATTTCTGGGAAGTAAATGCATTTGATGACTCAACTGCTAATGAATCTTTTCCTATGTTTCTTATTGAAAGTGTTAGCCCTCCTTCACCTCCTAGGGCTAGATCTCCACCTTCAAGAAGATGTAAAAGTAAATATCATCAAGGACCGAGGTCATCCAAATTTACATCACAGAGAGCTACTTCAAGATCTCAAGCAAAAAGCCAAGCTGAGAAAGCTGTATCCCAACAAGAGGCACAGAAGGAAACACACATACTGGAGTCAAACAAAGAGCAGAGAAAAGCTCAAGGGTTCTTTCAACAATTTGGACAATACTATGTTATTTAA 1425 0.3972 MVKRLLPLGYRFHPYDHELVGHYLKHKLLGDDSSVHNEIAEVDVCKFEPWDLPAYSKIKSDDPVWYFFSPLSLKFRKSTRRNRKTKTGYWKVTGKDRNIKTPHSNNVIGTKKTLVFYKSCGGHRVKTNWVIHEYHAVTFPDDKRGYVLCRLKEKAEKNAEVGTDSLIHDEGEPSSHIIADYENQPTTDRIPDVYTPPEVNLESVFLTLPQSGEFDFSSLQQSPIVIEQDPYFQASTFPNACFGNENSIKQAPFKTTVDEGNLGEINEFWHSFIIPSFANDSTPSQSLRKDYHESFETEAEPLSARHGNVLNSTSTVCNEDTGSRENPVISMVKSSHDAGPSSVSSKNEVNLEKKDSTFDDNFWGEDADFWEVNAFDDSTANESFPMFLIESVSPPSPPRARSPPSRRCKSKYHQGPRSSKFTSQRATSRSQAKSQAEKAVSQQEAQKETHILESNKEQRKAQGFFQQFGQYYVI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00053 474 ProSiteProfiles NAC domain profile. 6 154 IPR003441 GO:0003677|GO:0006355
Gabi4033g00053 474 MobiDBLite consensus disorder prediction 389 457 - -
Gabi4033g00053 474 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Gabi4033g00053 474 Pfam No apical meristem (NAM) protein 7 135 IPR003441 GO:0003677|GO:0006355
Gabi4033g00053 474 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 366 - -
Gabi4033g00053 474 SUPERFAMILY NAC domain 5 153 IPR036093 GO:0003677|GO:0006355
Gabi4033g00053 474 MobiDBLite consensus disorder prediction 415 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00053 Gabi-Chr4033 475580 478187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00053 6 151 NAC Transcription Factor Family AT4G35580 51.656 5.99e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4033g00053 NAM 8.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00053 - - ccaj:109803958 393.275