Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00052 ATGGGGAGCACAATTCCCATACTGGAATTCATGCCTGTAGGATTCAGGTTCCGTCCAACAGATGAAGAGCTTGTCGACCATTACCTCAAACTTAAGTTGCAAGGTGATGATGTCGCTGTCCACATCATCCCTGACCTTGATCTTTGTAAGGTGGAGCCTTGGGACGTACATGCGTTTTCAGTGATAAAGTCGGATGATCCAGAATGGTTTTTCTTCAGTCCTCCAGATTACAAGTATTCAAACAGTAAAAGGTTTAATAGGGCAACCAAGTGTGGTTTCTGGAAAGCCACTGGGAATGACCGTAAAATCAAGAAAAGGGGCACCAACAATGTCATTGGGACAAAGAAGACTCTTGTTTTCTATGAAGGAAGACTTCCTTCTGTTGTCAAGACCAACTGGGTTATTCATGAATATCATGCTACTACCTTTGATGTTAGCCAGAGAAGTTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGATGGAGAAGGAACTGATGCATTGATGCGTGATGAAGGAGAGCCCAGTAGACTCATGGCTTCTGACTGTGAAAATCAAGCAACAGCTGAAGGAAATGCAGATGTAGGTACTTTGCCAGAAATGAAAATGGAATCAATCTTTCAGGCACCACTTCAGGCAGAGAACTTCCCCTCAACACAAAAGTCTCCAATTGGCATTGCGCAGGAAGCATCGTTCCCAAACTCTCCATGTCTGAATGCCTATTCTAGAAATGAAAACAGCAGTGTGCAGACACCATTTGAAACTGCTGAAGAGGAAGATGAGTTCTTGAATTCAATTTTAGCTGATGAAGATTTTTTTATCATTGAAGAAAGGAGACATGCTTTTGTAAATGAATCCACCCAATCAGAGTCATTGAGAAGGGTATACTATGAAAGCAGTGACACGGATGCTGAAGTAGTCTCTGCACGGTATGGCAAAATTCTGGATGCTTCAACGGTGTGTAATGAACATTCTACTTCAGGCGAACACCATGCCTCAAAAATGTTTAAATCATCACATGGTGCTGTCCATGGCGGCACACGTCTTCTATCTTCTGACCATGAAGCAAACAAAGAGAAAAAGGAGAGTATCTTTCGAGATGATTGCTTCGGAGTGGGGACATCCTCTTGTGACTCGACTGCAGATAAACCTTTGGAGATCAATTGTATTGAGATTTCTAGTTCTCCTTCAACTCTAAGGAGATGGAAAAATCATTATTATCCAAGACCAGACAACTTTACATCACAAAGAGCTGCTACAAGAAGATCTCATCCTCAGAAGAAGGTTTCAAGCAGTGCAGCATCCCATCTTGAGGCTAAGAAGCAATTGCCCATTGTGGAATCAGAAAAAGATAAAAAAAAAGTTCAAAATACTAGTTCAAGAGAGAATTTAGCATTCAGAAGCCATCAATCCTCTGATGTCAATGGAATAGGTTCTTTTTTCCGCCTGGAGACACCAAGCCAAAGCCTATTTCCACGCTCGGTATATCTTGCCAATGTAGTTTTAGGGATCTTGTTGTTAATAGTCATTAGTTGGGAAGCGTTATCATGTTAG 1560 0.4141 MGSTIPILEFMPVGFRFRPTDEELVDHYLKLKLQGDDVAVHIIPDLDLCKVEPWDVHAFSVIKSDDPEWFFFSPPDYKYSNSKRFNRATKCGFWKATGNDRKIKKRGTNNVIGTKKTLVFYEGRLPSVVKTNWVIHEYHATTFDVSQRSFVLCRLMKKAEKKDGEGTDALMRDEGEPSRLMASDCENQATAEGNADVGTLPEMKMESIFQAPLQAENFPSTQKSPIGIAQEASFPNSPCLNAYSRNENSSVQTPFETAEEEDEFLNSILADEDFFIIEERRHAFVNESTQSESLRRVYYESSDTDAEVVSARYGKILDASTVCNEHSTSGEHHASKMFKSSHGAVHGGTRLLSSDHEANKEKKESIFRDDCFGVGTSSCDSTADKPLEINCIEISSSPSTLRRWKNHYYPRPDNFTSQRAATRRSHPQKKVSSSAASHLEAKKQLPIVESEKDKKKVQNTSSRENLAFRSHQSSDVNGIGSFFRLETPSQSLFPRSVYLANVVLGILLLIVISWEALSC 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00052 519 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Gabi4033g00052 519 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Gabi4033g00052 519 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 229 - -
Gabi4033g00052 519 MobiDBLite consensus disorder prediction 412 439 - -
Gabi4033g00052 519 MobiDBLite consensus disorder prediction 444 460 - -
Gabi4033g00052 519 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Gabi4033g00052 519 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
Gabi4033g00052 519 MobiDBLite consensus disorder prediction 412 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00052 Gabi-Chr4033 467786 472846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00052 8 162 NAC Transcription Factor Family AT4G35580 57.500 7.03e-59 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4033g00052 NAM 5.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00052 - - gsj:114390609 597.045