Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00040 ATGACACCCTTATGTCCCCTTTCTCCTTCTCCTTCTTCTTCTTGTTTCATGAGGAAGGATCACAACAAAGACTCTATCTTTACCTTCTTTGTATCTGTTGTTCTAATGACAAAGGCTACACAAAAGCCAACAACAAGATCAACCCCATCAACATCAACACCCTCTCATCCTTCTTCTGCATATTATTACATGGTTTCCAAGTTAATGGTCCCTTTCATAATAGTACAGTTACTTATTCTGTCCTTGTTGGTTGTTCAAGTCTCTTCTTGTAACCAAATTGAGAAAGACTCTCTTTTAGCCTTCTCTAGTAACATATCCACTTCTTTGCCTTACCCTTCTCTCAATTGGTCTACTTCTGCTGATTGCTGCCTGTGGGAAGGTATCACTTGTGATGGGGATCTTCAAGTCACTCATCTTTTGCTACCATCTAGAGGTCTCACTGGCTTCATCTCTTCATCTCTCATAGGCCTCACTTCTCTCTCTCACCTTAATCTATCTCATAATCGGTTATCTGGTAATCTCCAACACCAGTTTTTCTCATTGCTTAATCACTTGCTGGTTCTTGATTTAAGCTACAACCGTCTCTCTGGTGAATTGCCGCCCTTTGTTGCTGATAACAGTAGCAGCAATAGTAGTGTTAGTGTTATTCAGAAGCTGGATTTGTCTAGTAATTCGTTCAATGGAGCACTCCCTTCTTCTCTACTTCAGAAACTTGCTGGTGCAGCAGCAGGAGGGAGTTTGATATCTTTCAATGTTAGTAATAACAGCTTCACAGGTCAAATTCCCACTTCTCTCTTTTGCATTAACGACCATAACTCCTCTTCTCTCAGATTCTTGGATTATTCATCCAATGGTTTTGATGGTACCATTCAGCCTGGTCTAGGAGCATGTTCCAAGCTGGAGATATTCCGAGCAGGTTTCAATTTTCTAACCGGGACTATCCCAAGTGATATTTTTGAGGCTGTTTCTCTCACAGAAATCTCATTGCCACTCAATAAACTCAGTGGAACAATTGGTGATGGCATTGTTAACCTTGCCAACCTCACAGTTTTGGAGCTCTACTCCAATTATCTCACGGGTCCAATTCACTCTGATATTGGTAAACTCTCCAAATTGGAACAGCTACTTCTTCATGTCAACAATTTGACTGGTACCCTGCCCCCATCTCTGATGAACTGTGTCAATCTTGTTGTGTTGAATTTAAGGGTCAACAAATTGGAGGGAAATCTCTCAGTATTCAATTTCTCAGGTTTCCTCAGACTTGCTACACTAGACCTTGGCAACAATAATTTTACTGGTGTTTTACCACCAACCCTTTATGCATGCAAGTCACTTGCAGCAGTAAGGCTAGCATTTAATCAACTTGAGGGGCAGATTTCACCTGAGATACTTGGACTTGAGTCCCTTTCTTTCCTAGCAGTTTCTAGTAACAACCTGAGGAATGTCACTGGGGCTCTGAGAATACTCACAGGACTCAAGAAGCTAAGTACCCTTATGCTCTCCAAGAATTTTTACAATGAAATGATACCAAGTGATGTAAACTTAATAGGCCCGGATGAATTCCAAAATCTCCAGGTTCTAAGCTTGGGTGGTTGTAATCTCACAGGTCAAATACCAGACTGGCTTGTAAATCTGAAGAAGCTTGAGGCCTTGGACCTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTTGTTGGGTACACTTCCTCAGCTTTTCTACATAGACCTGTCTTTTAACCTCCTTACAGGAATTTTCCCAACGGAGTTCACAAGACTCCCAACACTAACATCTCAACAAGCATATAATAATGAACAAAGGACTTACTTGGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCCCAGATGCAATATAATCAGCTTTCCAGCCTACCACCAGCAATATATCTGGGAAGCAATCACCTTAATGGCAGTATCCCAATTGAGATTGGTCAACTAAAAGTCCTTCATCAGCTGGACCTGAAAAGCAACAACTTCTCTGGCAATATACCAGTTGAAATCTCAAACTTGACTAACTTAGAGAAACTAGACCTCTCAAGAAACCATCTATCTGGTGATATCCCTGACTCACTCAAAAGATTACACTTCTTGTCTTTTTTCAGTGTAGCGTACAATAATTTTCAAGGACAGATACCAAGTGGTGGTCAGTTTGATACTTTCTCCTCCTCCAGCTTCGAAGGAAATCCACAATTGTGTGGTTCAATTATTCAGCACCCTTGTTCTTCTCAACAAAATACTAATAGTACTGCAGCTAGTCACAGACCAAACAGAAAAGCAATGACTGGACTTATCATTGCAGCCTGCTTTGGCATCTCTTCCATGATGACAGTGTTGGTAATATGGTTACTCTCCAAGAGGAAGGTCAATCCAGGAGGAGTGCCAGAAAAAATTGAACTGGAATCAATTTCTGCCTACTCCAACAGTGGGGTTCATCCTGAGGTTGACAAGGAGGCTAGTGTAGTGGTATTGTTCCCCAACAAAACCATTGAAACCAAGGATCTTACCATATTTGAGATCTTAAAAGCCACTGAAAATTTCAGCCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACATTACCAAATGGAACTACACTAGCCATCAAGAAACTTTCAGGAGATTTGGGTCTTATGGAAAGGGAATTTAAAGCAGAAGTAGAGGCTTTGTCAACAGCACAACATGAGAATCTGGTGGCATTACAAGGCTATTGTGTGCATAATGGCTTTAGGCTTCTCATGTATACTTACATGGAGAATGGAAGTTTGGATTACTGGTTGCATGAAAAGGCTGATGGTGCATCTCAACTTGATTGGCCAACTCGTTTGAAGATAGCACAAGGTGCAAGTGGTGGTTTGGCTTACTTACATCAGATATGTGAACCACACATTGTGCATCGTGATATAAAGTCAAGCAATATACTCCTTGATGAAAAGTTTGAGGCACATGTTGCTGATTTTGGGTTGTCCCGGTTGATTCTTCCATATCATACTCATGTTACAACTGAACTTGTAGGTACATTAGGTTATATTCCACCAGAGTATGGACAAGCATGGGTGGCTACTCTGAGAGGAGATGTGTACAGCTTTGGAGTTGTCATGCTTGAGCTTCTCACTGGGAGGAGGCCTATTGATGTATGCAAGCCAAAAATGTCAAGAGAGTTGGTTGCTTGGATTCATCAGATGAGGAGTGAAGGAAAACAAGATCAAGTTTTTGACCCTCTTCTGAGAGGGAAGGGCTTTGAAGGAGAGATGCTTCAGGTACTTGATGTGGCCTGCATGTGTGTTAGCCACAATCCTTTCAAGAGACCAACCATCAGAGAAGTTGTTGAATGGCTGAAGAATGTAGGATCAGCCAACCAGCACAGAAATAATGACTAG 3417 0.4135 MTPLCPLSPSPSSSCFMRKDHNKDSIFTFFVSVVLMTKATQKPTTRSTPSTSTPSHPSSAYYYMVSKLMVPFIIVQLLILSLLVVQVSSCNQIEKDSLLAFSSNISTSLPYPSLNWSTSADCCLWEGITCDGDLQVTHLLLPSRGLTGFISSSLIGLTSLSHLNLSHNRLSGNLQHQFFSLLNHLLVLDLSYNRLSGELPPFVADNSSSNSSVSVIQKLDLSSNSFNGALPSSLLQKLAGAAAGGSLISFNVSNNSFTGQIPTSLFCINDHNSSSLRFLDYSSNGFDGTIQPGLGACSKLEIFRAGFNFLTGTIPSDIFEAVSLTEISLPLNKLSGTIGDGIVNLANLTVLELYSNYLTGPIHSDIGKLSKLEQLLLHVNNLTGTLPPSLMNCVNLVVLNLRVNKLEGNLSVFNFSGFLRLATLDLGNNNFTGVLPPTLYACKSLAAVRLAFNQLEGQISPEILGLESLSFLAVSSNNLRNVTGALRILTGLKKLSTLMLSKNFYNEMIPSDVNLIGPDEFQNLQVLSLGGCNLTGQIPDWLVNLKKLEALDLSYNQISGSIPPLLGTLPQLFYIDLSFNLLTGIFPTEFTRLPTLTSQQAYNNEQRTYLELPVFANANNVSQMQYNQLSSLPPAIYLGSNHLNGSIPIEIGQLKVLHQLDLKSNNFSGNIPVEISNLTNLEKLDLSRNHLSGDIPDSLKRLHFLSFFSVAYNNFQGQIPSGGQFDTFSSSSFEGNPQLCGSIIQHPCSSQQNTNSTAASHRPNRKAMTGLIIAACFGISSMMTVLVIWLLSKRKVNPGGVPEKIELESISAYSNSGVHPEVDKEASVVVLFPNKTIETKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFKAEVEALSTAQHENLVALQGYCVHNGFRLLMYTYMENGSLDYWLHEKADGASQLDWPTRLKIAQGASGGLAYLHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLILPYHTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGRRPIDVCKPKMSRELVAWIHQMRSEGKQDQVFDPLLRGKGFEGEMLQVLDVACMCVSHNPFKRPTIREVVEWLKNVGSANQHRNND 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00040 1138 SUPERFAMILY L domain-like 120 337 - -
Gabi4033g00040 1138 SMART serkin_6 854 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4033g00040 1138 PRINTS Leucine-rich repeat signature 678 691 - -
Gabi4033g00040 1138 PRINTS Leucine-rich repeat signature 548 561 - -
Gabi4033g00040 1138 ProSitePatterns Protein kinases ATP-binding region signature. 860 883 IPR017441 GO:0005524
Gabi4033g00040 1138 FunFam Leucine-rich repeat receptor protein kinase MSP1 821 929 - -
Gabi4033g00040 1138 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 489 1126 - -
Gabi4033g00040 1138 Pfam Leucine rich repeat N-terminal domain 94 131 IPR013210 -
Gabi4033g00040 1138 ProSiteProfiles Protein kinase domain profile. 854 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4033g00040 1138 FunFam Leucine-rich repeat receptor-like protein kinase 930 1136 - -
Gabi4033g00040 1138 SUPERFAMILY L domain-like 624 740 - -
Gabi4033g00040 1138 SUPERFAMILY L domain-like 267 615 - -
Gabi4033g00040 1138 FunFam Tyrosine-sulfated glycopeptide receptor 1 415 753 - -
Gabi4033g00040 1138 Gene3D Ribonuclease Inhibitor 385 484 IPR032675 -
Gabi4033g00040 1138 FunFam Receptor-like protein 2 92 215 - -
Gabi4033g00040 1138 SUPERFAMILY Protein kinase-like (PK-like) 838 1125 IPR011009 -
Gabi4033g00040 1138 ProSiteProfiles Leucine-rich repeat profile. 547 569 IPR001611 GO:0005515
Gabi4033g00040 1138 ProSiteProfiles Leucine-rich repeat profile. 680 702 IPR001611 GO:0005515
Gabi4033g00040 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 315 410 - -
Gabi4033g00040 1138 Gene3D Ribonuclease Inhibitor 91 384 IPR032675 -
Gabi4033g00040 1138 Gene3D Transferase(Phosphotransferase) domain 1 930 1138 - -
Gabi4033g00040 1138 Gene3D Phosphorylase Kinase; domain 1 816 929 - -
Gabi4033g00040 1138 Pfam Protein kinase domain 855 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4033g00040 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Gabi4033g00040 1138 SMART LRR_typ_2 182 206 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 369 393 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 157 181 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 545 569 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 466 488 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 418 442 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 678 702 IPR003591 -
Gabi4033g00040 1138 SMART LRR_typ_2 213 237 IPR003591 -
Gabi4033g00040 1138 Gene3D Ribonuclease Inhibitor 485 757 IPR032675 -
Gabi4033g00040 1138 Pfam Leucine rich repeat 523 582 IPR001611 GO:0005515
Gabi4033g00040 1138 Pfam Leucine Rich Repeat 680 702 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00040 Gabi-Chr4033 406538 410142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00040 49 785 Miscellaneous Gene Families AT1G17240 50.135 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi4033g00040 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00040 - - gmx:100781943 1718.36