Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00027 ATGGGTGCAAAGTATAAATTTGAGATAACCGGCAATGTCAGGGTGGTAGCTGTAATATTCCTCTGCATGGTGGTTACTATTGTTCTCATACTCCTCAACCACGCAAAATGGCTCAGGTGGCGCATTGAGCAAAGCACTGCTCCTCAACCACGCAACCGCCGCCGCTTTGTCTTTGCCCCTGGTCAAGATCCAGTTACCTATGGCACTAACCGAATTGGTCTTGACCCTGCAGTTCTTAGGTCCTTGCCAGTGTTGGTGTTCCAACAAGAGGACTTCAAAGATGGTTTGGAATGTGCGGTTTGTCTCTCCGAGATTGTTCAAGGTGAAAAGGCTAGGCTTTTACCAAAATGCAATCATGGGTTTCATGTGGATTGCATAGATATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGTAGGAACCTTGTTGACTCTGAATCCTCTAATAGTGACCCATTCGAGGCAGAAAATTCAGCTACAATGAGTGGCTTAGAGTCTTCAAATTTCCCCACAAATGTGTTAGTTTGGGGAGACCGGACCCAAGTAAGTTCTGTTGGTGTTTCCTTGGAAGAAGGGACTTCTTATCGAACACCTTGCTCTACATCATCATCATCATCATCTTCTTCAGCCAGTGATAGTAGTAATTGTAGATGTCATGGAATGTTGGTGATTGATATACCAAGTGAGTTCAATTCGTCCTCTTTGTCCCCTTCTGCTAGTAGGTGTGATGAAGATGAGATGAAATCACCAATGACAGCTAGACTGAGGTCACTGAAGAGGCTTCTGAGCAGGGACAAAAAGTTAAGTCCTTGTAGTCCTAGTTCTATGGATGTAGAACAAGCGCAGAGCTAG 852 0.4484 MGAKYKFEITGNVRVVAVIFLCMVVTIVLILLNHAKWLRWRIEQSTAPQPRNRRRFVFAPGQDPVTYGTNRIGLDPAVLRSLPVLVFQQEDFKDGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNLVDSESSNSDPFEAENSATMSGLESSNFPTNVLVWGDRTQVSSVGVSLEEGTSYRTPCSTSSSSSSSSASDSSNCRCHGMLVIDIPSEFNSSSLSPSASRCDEDEMKSPMTARLRSLKRLLSRDKKLSPCSPSSMDVEQAQS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00027 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 145 IPR013083 -
Gabi4033g00027 283 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Gabi4033g00027 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 12 177 - -
Gabi4033g00027 283 MobiDBLite consensus disorder prediction 268 283 - -
Gabi4033g00027 283 SMART ring_2 98 139 IPR001841 -
Gabi4033g00027 283 MobiDBLite consensus disorder prediction 229 251 - -
Gabi4033g00027 283 FunFam RING-H2 finger protein ATL3 66 145 - -
Gabi4033g00027 283 CDD RING-H2_EL5-like 97 140 - -
Gabi4033g00027 283 MobiDBLite consensus disorder prediction 192 214 - -
Gabi4033g00027 283 SUPERFAMILY RING/U-box 78 146 - -
Gabi4033g00027 283 MobiDBLite consensus disorder prediction 263 283 - -
Gabi4033g00027 283 Pfam Ring finger domain 97 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00027 Gabi-Chr4033 235838 236689 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00027 8 266 C3H Transcription Factor Family AT1G53820 42.140 2.02e-62 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00027 - - gmx:100775523 369.392