Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00025 ATGGGTGCAAAGTCAGGGTCAAGTGACACATTTGGTGAGTCTGATAAATTTGAGATAACCGGCAAGATCGTGGTGGTAGCTGTGATATTCCTCTTCATGGTGGTTACTTTTGTTCTCATACTCCATCTCTATGCAAAATGGTTCTGGTGGCGCATTGAGCAAAGCACTGCTCCTCAACCACGCAACCGCCGCCGTCGCCGCCGCTTTGTCTTTGCCCCTGGTCAAGATCCAGTTACCTATGGCACTAACCGAATTGGTCTTGACCCTGCAGTTCTTAGGTCCTTGCCAGTGTTGGTGTTCCAACAAGAGGACTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCTCCGAGATTGTTCAAGGTGAAAAGGCTAGGCTTTTACCAAAATGCAATCATGGGTTTCATGTAGATTGCATAGATATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGTAGGAACCTTGTTGACTCTGAATCATCTAATAGTGACCCTTTAGAGGCAGAAAATTCAGCTACAATGAGTGGCTTAGAGTCTTCAAATTTTCCCACAAATATGTTAGTTTGGGGAGACCAGACCCAAGTAAGTTCTGTTGGTGTTTCCTTGGAAGAAGGGACTTCTCATCAAACACCTTGCTCTACATCATCAACATCATCTTCTTCTTCTTCTTCTTCAGCCAGTGATAGTAGCAATTGTAGATGTCATGGAATGTTGGTGATTGATATACCAAGTGAGTTCAATTCGTCCTCTTTGTCCCCTTCTGCTAGTAGGTGTGATGAAGATGAGATGAAATCACCAATGACAGCTAGACTGAGGTCACTGAAGAGGCTTCTGAGCAGGGACAAAAAGTTAAGTCCTTGTAGTCCTAGTTCTATGGATGTAGAACAAGCGCAGAGCTAG 900 0.4433 MGAKSGSSDTFGESDKFEITGKIVVVAVIFLFMVVTFVLILHLYAKWFWWRIEQSTAPQPRNRRRRRRFVFAPGQDPVTYGTNRIGLDPAVLRSLPVLVFQQEDFKDGLECAVCLSEIVQGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNLVDSESSNSDPLEAENSATMSGLESSNFPTNMLVWGDQTQVSSVGVSLEEGTSHQTPCSTSSTSSSSSSSSASDSSNCRCHGMLVIDIPSEFNSSSLSPSASRCDEDEMKSPMTARLRSLKRLLSRDKKLSPCSPSSMDVEQAQS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00025 299 CDD RING-H2_EL5-like 110 153 - -
Gabi4033g00025 299 SMART ring_2 111 152 IPR001841 -
Gabi4033g00025 299 MobiDBLite consensus disorder prediction 284 299 - -
Gabi4033g00025 299 MobiDBLite consensus disorder prediction 198 230 - -
Gabi4033g00025 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Gabi4033g00025 299 SUPERFAMILY RING/U-box 91 158 - -
Gabi4033g00025 299 Pfam Ring finger domain 110 153 IPR001841 -
Gabi4033g00025 299 MobiDBLite consensus disorder prediction 245 266 - -
Gabi4033g00025 299 MobiDBLite consensus disorder prediction 279 299 - -
Gabi4033g00025 299 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Gabi4033g00025 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 231 - -
Gabi4033g00025 299 FunFam RING-H2 finger protein ATL3 79 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00025 Gabi-Chr4033 222148 223398 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00025 11 282 C3H Transcription Factor Family AT1G53820 44.805 8.06e-68 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00025 - - gmx:100775523 403.29