Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00017 ATGACCAGCAGCAACCACAATTCCCTGTCCAAGAAGAAGAAGCTCTTCTTGTCTCTCTTCTCCACCCTTCTTCTAGTGGCAACCGTCGCCGCCATTGTCGTCGGAGTAAACTCACACAAGAAGAACTCCACCGGAGAAAACAATGCCTCCTCCCTCTCTCACCATTCTCACACCATAATCAAAAACGCTTGCAGCAGCACATTCTACCCTGAACTCTGTTTCTCAGCCATATCCTCTGAACCTGGCATCACAAACAAAGTAACAAACCACAAGGATGTTATAGAGTTATCCTTGAACATCACAACCAGAGCCGTTGAACACAACTACTTCACAGTGGAGAAGCTTCAAAACAAAAAGGGTCTAACAAAAAGGGAGAAAATCGCACTCCATGATTGCTTAGAAACCATTGATGAAACCCTCGAAGAGCTCAAGGAAGCCTTTGAGGATCTCAAACTTTACCCTCAAAAGAAATCACTTTACCAACATGCTGATGACCTCAAAACACTCATCAGTGCCGCCATAACAAACCAAGTTACTTGCTTGGATGGTTTCTCTCACGAGGGTGCTGATAAGACTGTGAGAAAAGCTCTTGAACAAGGACAGATACATGTTGAACACATGTGTAGCAATGCTTTGGCTATGACCAAGAACATGACTGATACTGACATAGCCAACTATGAACAGAACATGATTATGGATGGAAACAACAATAATAGGAAGCTGATGATGGATTTTAATGAGGGTGCAATTCAGTGGCCGGAGTGGATTTCTGCGGCGGATAGGAGGCTTTTGCAGGCGCCGGCGGTGACACCGGATGTGGTGGTGGCGGCTGACGGCAGCGGTGACTTTAAGACGGTGTCAGCTGCGGTGGATGCAGCTCCTTTGAAGAGTAGCAAGAGATTTGTTATAAGGATTAAAGCTGGGGTTTATAGAGAGAATGTTGATGTGCCAAAGAAGAAGATTAATATAATGTTCTTGGGTGATGGTAGAACTAACACTATCATCACTGGTAGCAGAAATGTTGTTGATGGCAGCACAACCTTCCACTCTGCCACTGTCGCCGTTGTGGGTGGACAATTTTTGGCCCGAGACATAGCCTTTCAAAACACAGCAGGGCCCTCAAAGCACCAAGCAGTGGCTCTAAGAGTTGGTGGTGACCTTTCAGCCTTCTACAACTGTGACATCTTAGCATACCAAGATACCCTTTATGTACACAACAATCGCCAATTCTTTGTGAACTGTCTCATATCAGGGACAGTGGATTTTATCTTTGGTAACTCAGCTGTTGTGTTACAAAACTGTGACATTCACGCTAGGCTTCCTAATTCAGGCCAAAAGAACATGGTCACTGCACAAGGGAGGGTTGATCCTAACCAAAACACTGGCATTGTTATCCACAAGTGTAGAATTGGTGCCACTAAGGATTTGGAACCTGTGAAGAAGAGTTTCCCTACATATCTTGGTAGGCCATGGAAAGAGTACTCTAGGACTGTGATTATGCAAACAACAATTAGTGATGTGATTGACCCAATTGGGTGGCATGAGTGGAATGGTGACTTTGCTTTGAACACTTTGGTTTATAGGGAATATCAAAACAATGGGCCAGGATCTGGAACTTCTAAGAGGGTTGCATGGAAAGGGTTTAAGGTTATTACTAATGCTGCTGAGGCCCACGCTTTTACTCCTGGAAGTTTCATTGCGGGCTCTACCTGGTTGGGCTCTACTGGGTTTCCTTTCTCTCTTGGGTTGTAA 1752 0.4492 MTSSNHNSLSKKKKLFLSLFSTLLLVATVAAIVVGVNSHKKNSTGENNASSLSHHSHTIIKNACSSTFYPELCFSAISSEPGITNKVTNHKDVIELSLNITTRAVEHNYFTVEKLQNKKGLTKREKIALHDCLETIDETLEELKEAFEDLKLYPQKKSLYQHADDLKTLISAAITNQVTCLDGFSHEGADKTVRKALEQGQIHVEHMCSNALAMTKNMTDTDIANYEQNMIMDGNNNNRKLMMDFNEGAIQWPEWISAADRRLLQAPAVTPDVVVAADGSGDFKTVSAAVDAAPLKSSKRFVIRIKAGVYRENVDVPKKKINIMFLGDGRTNTIITGSRNVVDGSTTFHSATVAVVGGQFLARDIAFQNTAGPSKHQAVALRVGGDLSAFYNCDILAYQDTLYVHNNRQFFVNCLISGTVDFIFGNSAVVLQNCDIHARLPNSGQKNMVTAQGRVDPNQNTGIVIHKCRIGATKDLEPVKKSFPTYLGRPWKEYSRTVIMQTTISDVIDPIGWHEWNGDFALNTLVYREYQNNGPGSGTSKRVAWKGFKVITNAAEAHAFTPGSFIAGSTWLGSTGFPFSLGL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00017 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 219 IPR035513 -
Gabi4033g00017 583 Coils Coil 133 153 - -
Gabi4033g00017 583 SUPERFAMILY Pectin lyase-like 267 582 IPR011050 -
Gabi4033g00017 583 ProSitePatterns Pectinesterase signature 1. 297 316 IPR018040 -
Gabi4033g00017 583 SMART PMEI_2 55 214 IPR006501 GO:0004857
Gabi4033g00017 583 FunFam Pectinesterase 266 583 - -
Gabi4033g00017 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Gabi4033g00017 583 Gene3D - 266 583 IPR012334 -
Gabi4033g00017 583 NCBIfam pectinesterase inhibitor domain 53 218 IPR006501 GO:0004857
Gabi4033g00017 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 219 IPR035513 -
Gabi4033g00017 583 PANTHER PECTINESTERASE 25 573 - -
Gabi4033g00017 583 FunFam Pectinesterase 56 219 - -
Gabi4033g00017 583 CDD PMEI-like_3 63 219 - -
Gabi4033g00017 583 Pfam Pectinesterase 272 568 IPR000070 GO:0030599|GO:0042545
Gabi4033g00017 583 Pfam Plant invertase/pectin methylesterase inhibitor 59 214 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00017 Gabi-Chr4033 132454 136480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00017 47 583 Carbohydrate Esterase AT3G14310 71.688 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00017 K01051 - pvu:PHAVU_010G123100g 912.524