Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00016 ATGGATTCTATCAAGTCCTTCAAGGGGTACGGCAAAGTAGATGAGCTCGAGCAGAAAGCCTTTCAGAAGAAGACACGTAAGCGTGTGATAATCGTGATCGTCTCGTCCATCGTTCTCATAGCGTTGATTATCGCCGCGGTTGCAGGGGTCGTCATATACAAGCGCAACACCTCATCATCCTCAGCCGACTCGGTTCCCCAACCCGATTTGAACCCGGCCGCGTCACTCAAAGCTGTTTGCGAGGTGACTCAGTACCCTAACTCGTGCTTCGCCGCAATCTCCGCCGTCGCGAACTCCAACACCACCGATCCCGAGCTACTCTTCAAGCTCTCCCTACGCGTCGCCATTGACGAACTTTCCAAGCTCTCGAGCTTCCCTTCGAAGCTCCGCGCCATTGCGAACAACGACACGCGCCTCCAGAAGGCCATCGACGTTTGCTCCACCGTCATCGGCGACGCGCTGGACCGGCTCAACGATTCGATCTCCTCGCTAGACGTCGCCGGAGGCGGCGGCGCCGGGAAAATTCTCTCGACGGCGAAGATCAGCGACTACGAGACCTGGCTCAGCGCCGCGATCACGGACCAGGACACGTGCCTGGACGCTCTCGGCGAGGTGAACTCCACCGCCGCGCGCGGCGTTCTACGGGAAATGGGAACCGCCATGAAGAACTCCACCGAGTTCTCGAGTAACAGCTTGGCCATCGTCACGAGGATCCTAGGGCTTCTCTCGAAGTTGAACGCGCCGATCCACAACCGGAGGCTGCTAGGAGCGTTCCCGGAGTGGGTGAGCGCGGCGGATAGGAGGCTGTTGGCGGAGGAGGGAAACGATACTACGACGCCGGACGCGGTGGTGGCGAAGGACGGCAGCGGACAGTACAAGACGATTGCGGAGGCGGTGAAGGCGGTGAAGAAGAAGAGCGATAAGAGATTCGTGGTGTACGTGAAGGAAGGGGTTTACGTGGAAAACATCGATTTGGATAAGGATACGTGGAATGTGATGATCTACGGTGACGGCAAGACCAAAACCGTCGTCCAGGGTGGCCGGAACTTCATCGACGGCACTCCCACTTTTGAAACTGCCACTTTCGCTGTTAAAGGAAAGGGATTCATTGCCAAAGACATCGGATTCGTTAACACTGCAGGTGCAGCTAAACACCAAGCTGTGGCTTTAAGATCTGGCTCGGATCGTTCTGTGTTCTACAGGTGCTCATTTGATGGGTTTCAGGATACTCTCTATGCACATTCTAACCGCCAATTCTACCGTGAGTGTGACATTACAGGTACCATTGACTTCATATTTGGAAATGCTGCTGTTGTGTTCCAAAGTTGCAAAATCATGCCTAGGCAGCCTCTATTAAACCAGTTCAACACAATCACAGCTCAGGGCAAGAAGGATCCTAACCAAAACACTGGAATTATAATCCAGAAATCTAGCATCACTACCTTAGAGAATGACAATCTCACAGCTGACACATACCTTGGTAGGCCTTGGAAAGATTACTCCACTACTGTTATCATGCAATCTGATATTGGGTCATTCTTGAAACCTGTTGGGTGGGTGAGTTGGGTTACCAATGTGGAACCTGCAAATACCATCTTGTATGCTGAATACCAGAACTCTGGGTCAGGAGCAGACGTGACCCAGAGGGTCAAATGGGCTGGTTATAAGCCCACTCTCACGGACTCTGAGGCAGGGAAGTTTACTGTGGAGTCCTTTATCCAGGGCCCTGAATGGTTGCCAGATGCTGCTGTGAAGTTTGAATCTTCCTTGTGA 1773 0.5307 MDSIKSFKGYGKVDELEQKAFQKKTRKRVIIVIVSSIVLIALIIAAVAGVVIYKRNTSSSSADSVPQPDLNPAASLKAVCEVTQYPNSCFAAISAVANSNTTDPELLFKLSLRVAIDELSKLSSFPSKLRAIANNDTRLQKAIDVCSTVIGDALDRLNDSISSLDVAGGGGAGKILSTAKISDYETWLSAAITDQDTCLDALGEVNSTAARGVLREMGTAMKNSTEFSSNSLAIVTRILGLLSKLNAPIHNRRLLGAFPEWVSAADRRLLAEEGNDTTTPDAVVAKDGSGQYKTIAEAVKAVKKKSDKRFVVYVKEGVYVENIDLDKDTWNVMIYGDGKTKTVVQGGRNFIDGTPTFETATFAVKGKGFIAKDIGFVNTAGAAKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVFQSCKIMPRQPLLNQFNTITAQGKKDPNQNTGIIIQKSSITTLENDNLTADTYLGRPWKDYSTTVIMQSDIGSFLKPVGWVSWVTNVEPANTILYAEYQNSGSGADVTQRVKWAGYKPTLTDSEAGKFTVESFIQGPEWLPDAAVKFESSL 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00016 590 FunFam Pectinesterase 275 590 - -
Gabi4033g00016 590 PANTHER PECTINESTERASE 39 580 - -
Gabi4033g00016 590 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 239 IPR035513 -
Gabi4033g00016 590 SUPERFAMILY Pectin lyase-like 279 586 IPR011050 -
Gabi4033g00016 590 FunFam Pectinesterase 72 239 - -
Gabi4033g00016 590 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Gabi4033g00016 590 NCBIfam pectinesterase inhibitor domain 60 236 IPR006501 GO:0004857
Gabi4033g00016 590 Pfam Pectinesterase 281 575 IPR000070 GO:0030599|GO:0042545
Gabi4033g00016 590 Pfam Plant invertase/pectin methylesterase inhibitor 76 234 IPR006501 GO:0004857
Gabi4033g00016 590 CDD PMEI-like_3 78 238 - -
Gabi4033g00016 590 SMART PMEI_2 71 234 IPR006501 GO:0004857
Gabi4033g00016 590 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 239 IPR035513 -
Gabi4033g00016 590 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Gabi4033g00016 590 Gene3D - 275 590 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00016 Gabi-Chr4033 125687 128422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00016 1 584 Carbohydrate Esterase AT1G53840 57.718 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00016 - - gmx:100784642 922.924