Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4033g00002 ATGGGTCTTTCTGAAGCAAATACGGCAACAAAGCCAAACACACGCAAGAGAAAGATTGAAAGCAAGAAAGTGGAACAAAAGAATAAAGAAAGCGTGATTGAAATCAAGAAAGTGAAACAAAAGAATAAGGAAAGCGTGATCTTCTCCAAACACAGAGTAGGACTTTTTAACAAAGTCACTGAACTATCCATTCTATGCGAGGCAGAAACAGCATTGGTACTCATCAACTCTGAGAATGGAAACCTCGATGTTTGTGGCTACCCAAACCCTGACACTGTCATTCAACGCTATCTAGCAAGAGGGTATTTGAATTTGGATCCCAACCCCAACCAATATGCCCGTGCCAATAAAGTTAGGAAGAAGCAAGAATCAGTACTTGAAACCTTAAATCTGCAATATGAGGCCTTTGAGACTCTGTTGGAGGAGAAAAGGATGCATCTACAAGCAATCTTAGAGGCACAAATCATGGCCGGTTCCTTCTTCCCATCTTGGTGGGAAAATTCCATTGAGGAGATGGGTTTGAGCGACCTTGAGAATTTCAAGACCTCCTTGGAACATTTGAAGCTTAACTTGGTTGCTATAGCACAAGAGAAGAAGGTAGAATAA 606 0.4125 MGLSEANTATKPNTRKRKIESKKVEQKNKESVIEIKKVKQKNKESVIFSKHRVGLFNKVTELSILCEAETALVLINSENGNLDVCGYPNPDTVIQRYLARGYLNLDPNPNQYARANKVRKKQESVLETLNLQYEAFETLLEEKRMHLQAILEAQIMAGSFFPSWWENSIEEMGLSDLENFKTSLEHLKLNLVAIAQEKKVE 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4033g00002 201 SMART madsneu2 33 88 IPR002100 GO:0003677|GO:0046983
Gabi4033g00002 201 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Gabi4033g00002 201 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Gabi4033g00002 201 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Gabi4033g00002 201 PANTHER MADS BOX PROTEIN 33 191 - -
Gabi4033g00002 201 Coils Coil 21 41 - -
Gabi4033g00002 201 MobiDBLite consensus disorder prediction 1 23 - -
Gabi4033g00002 201 Gene3D - 40 130 IPR036879 GO:0003677|GO:0046983
Gabi4033g00002 201 Coils Coil 177 197 - -
Gabi4033g00002 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 38 82 IPR002100 GO:0003677|GO:0046983
Gabi4033g00002 201 SUPERFAMILY SRF-like 33 105 IPR036879 GO:0003677|GO:0046983
Gabi4033g00002 201 ProSiteProfiles MADS-box domain profile. 33 79 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4033g00002 Gabi-Chr4033 9054 9659 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4033g00002 33 188 Type I MADS-box Gene Family AT5G60440 36.478 3.40e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gabi4033g00002 SRF-TF 2.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4033g00002 - - gmx:100817750 159.844