Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4029g00002 ATGGATAATCCTTCTAGGCACAAACCAAAAAAGGAAAATGCACTTGAATCTTCTGGCAGTCCACAAAAAAGAAAGATAACAGCCAGATGGGATCCAGGAAATGCATGTCGGCATGTAATTGATGAAGCACCTGTGTTTTATCCTACTCCTGAGGAGTTTGAAGACACACTTGGTTACATTGCTAAGATACGTCCTGAAGCTGAACCCCATGGCATATGTAGGATTGTCCCTCCAGTTTCCTGGGTTTTACCTTGTACTCACAAGGAGAAAGATTTATGGGAAAATGCTAAATTTCCCACCCATATTCAGCAAATTGACTTGCTTCAGAACAGGGAACCCATGAGAAAGAAAAGTAGGGGAAGGAAACCAAAACGGAGAAAGTACTCAAGGAAGGGTTCATTAAGGAAAACTGCAAATTCAGGCTCTGAAGCTAATGTTACTTCTGAACCTGGTGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAGCATGCTAATGTTTTTAAAGATTGCTACTTTGGGTTGAATGCTGTCAATGAAGATGGAAAAGTTAGTAAAAATAATCACAAGAGATGGGAGCCCTCTATGGAGGAAATTGAAGGTGAATTCTGGCGAATAGTTGAGGAACCAACCGATGAGGTTGAGGTGTATTATGGAGCTGACGTGGACACTGGTGCACTTGGAAGTGGTTTTCCTAAGCCATCATCCTTAACTAAGAGTGATTCAGATCGGTATGCTATGTCTGGTTGGAATCTGAATAACTTTGCGCGACAGCCAGGTTCTGCATTATATTTTGAAGGAAGTGATATCTCCGGAGTTGTAGTTCCATGGATGTATGTTGGAATGTGCTTTTCAACATTTTGCTGGCATGTTGAGGATCATAACCTCTATTCGCTTAATTATCTGCACTGGGGTGAACCAAAAGTATGGTATGGAGTACCTGGAAGCCATGCTTCAGCATTGGAAGATGCAATGAAAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTGCTTAATGAATTGGTGACTCTGTTATCTCCTTCAATTCTTAAATCTGAGGGAGTTCCTGTGTATCGCACCGTCCAGCATCCAGGGGAATTTGTCCTTACCTTTCCAAAGGCATACCACTGTGGCTTCAACTGCGGATTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGTTTGTGCATGGCCAGGATGCTGCTGAGCTTTACAGTTTGCAGTGCCGTAAGACAACATTGTCCCATGACAAGGTTTTATTTGGGTCAGCTCAGGAAGCTGTACTAGCCCTTGTAGAGCTAACTCTCCATGGAAAAGAAAATCTAAAATATTCAAAATGGAGAAGTGTTTGTGGGAAAGATGGAGTTCTTACCAATGCAGTTAAGACAAGGATAAAGATAGAAAAAGAAAGGCTTGACTGTCTTCCTACTAATTTAAAGATGCTGAAGATGGACAGTGACTTTGATTTGTCTGAGGAAAAAGAATGCTTCTCTTGCTTCTATGACTTGCATCTTTCTGCTGTAGGTTGCAGTTGCTCTCCTGGCAGATATTTTTGTCTTAAGCACTCAAATTTGCTTTGCTCATGTAAAAAGGACAAAATATATGTTCTACTTCGTTTTACTATGGATGAGCTAAGTACATTGGTCGAAGCATTGGAAGGAGAATCACATGCTATTGAAGTGTGGGCAAATAGAAACACCAGAATGGTTTCTGCTAATGCTGCAGATGATAGCATGTGTAGACAAGATGTGGAGAGCGCCATGTGCAAAACGAAGAGTCATGAAGGAAAAAGCTCAACTTCTTGTGCAGGAACTAATGAGAAGTCAAAATTAGGCCCCTCGGAGTCGCCTGCACCTATAGATTTTCCTAAGGACAATATGATCAACAAAATGATGACCGCGGACAACAAGCAGGGAGGTTCTTTGGATTTGAACCTTGATGTTGTTTCTGATGAACCTGAAAGTAGTTTGCTACGCATTGTTGATGGCCATCATAATAAGTGTGTTCAATGTGTGGATAAAGTCTGCTGTGCAGAGGCCAGAAAGGAAGGAGACGACATGGAACTTGGTGCTGGTGGTATCCAATCGGCCTCCAATACTGTCTTGGAGAAAGATTTTACGTCATCTTCAAGGGATGTTCGAAATTCTTGTAAACTTGATGGTTGTCAATTGTTTGGGCAAATGCTTTCAGGTTCAGGAGAGAAACTCAACAATGAATTTACAAGGAAAGTTGTAACCTCCTCCAATACAAGTATATCTTTGACAAACCAAAACTTTGGTATTTCTGTTGAGTATGTACGTTTGGGCTCTGTTTCGTATGGAAAGCTGTGGTGCAGTAAACAAGCAATATATCCAAAAGGATTCAAAAGTCGTGTTAAGTTCTTTAGCATTTTTGATCCAAGAAGCACCTGTAACTATGTTTCTGAAGTCATCGATGGAACATTTCTTGGGCCTATTTTCAAGGTTTACATGGAAGAATATCCAAGTGACGCTTTCACAGACACGTCAGCAGATAAGTGTTGGGAAAGAGTTAGTGAGACTCTAAATGATGAAATCAAGAGGCGAAGGAGTCTAGTTGGAAAAGAACTTCCTCACTTGGAACTTCTGCAAAACATTAACGGCCATAAAATGTTTGGATTCCTTTCTCCACTCATTATTCAGGCCATTGAAGCTCAAGATCCCAGTCATCAATGCAAAGAGTACTGGAATAACAAAGAAGTGCTCCCTGAATCCTCAGGCATTGTTGCCATTGATGAGTGTAAGTTAACTCATGGTACAAGTAACTCTCTAGGTGATGTCAAGACCAAACTTTCTGGTGTAAATTTAAAAAGGAAGAAGCAATATAACATAAGAGGAAGTGTAGATTTAAAAAGGAAGAAGCAAGATAACATAGGAAGAAGTTATCATTCGTTTGAGAAATGA 2952 0.4072 MDNPSRHKPKKENALESSGSPQKRKITARWDPGNACRHVIDEAPVFYPTPEEFEDTLGYIAKIRPEAEPHGICRIVPPVSWVLPCTHKEKDLWENAKFPTHIQQIDLLQNREPMRKKSRGRKPKRRKYSRKGSLRKTANSGSEANVTSEPGEKFGFQSGSDFTLKDFQQHANVFKDCYFGLNAVNEDGKVSKNNHKRWEPSMEEIEGEFWRIVEEPTDEVEVYYGADVDTGALGSGFPKPSSLTKSDSDRYAMSGWNLNNFARQPGSALYFEGSDISGVVVPWMYVGMCFSTFCWHVEDHNLYSLNYLHWGEPKVWYGVPGSHASALEDAMKKHLPDLFEEQPNLLNELVTLLSPSILKSEGVPVYRTVQHPGEFVLTFPKAYHCGFNCGFNCAEAVNVAPVDWFVHGQDAAELYSLQCRKTTLSHDKVLFGSAQEAVLALVELTLHGKENLKYSKWRSVCGKDGVLTNAVKTRIKIEKERLDCLPTNLKMLKMDSDFDLSEEKECFSCFYDLHLSAVGCSCSPGRYFCLKHSNLLCSCKKDKIYVLLRFTMDELSTLVEALEGESHAIEVWANRNTRMVSANAADDSMCRQDVESAMCKTKSHEGKSSTSCAGTNEKSKLGPSESPAPIDFPKDNMINKMMTADNKQGGSLDLNLDVVSDEPESSLLRIVDGHHNKCVQCVDKVCCAEARKEGDDMELGAGGIQSASNTVLEKDFTSSSRDVRNSCKLDGCQLFGQMLSGSGEKLNNEFTRKVVTSSNTSISLTNQNFGISVEYVRLGSVSYGKLWCSKQAIYPKGFKSRVKFFSIFDPRSTCNYVSEVIDGTFLGPIFKVYMEEYPSDAFTDTSADKCWERVSETLNDEIKRRRSLVGKELPHLELLQNINGHKMFGFLSPLIIQAIEAQDPSHQCKEYWNNKEVLPESSGIVAIDECKLTHGTSNSLGDVKTKLSGVNLKRKKQYNIRGSVDLKRKKQDNIGRSYHSFEK 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4029g00002 983 ProSiteProfiles JmjN domain profile. 43 84 IPR003349 -
Gabi4029g00002 983 Gene3D - 770 909 - -
Gabi4029g00002 983 ProSiteProfiles FYR domain FYRN motif profile. 765 823 IPR003888 GO:0005634
Gabi4029g00002 983 PANTHER LYSINE-SPECIFIC DEMETHYLASE 38 854 - -
Gabi4029g00002 983 Pfam F/Y-rich N-terminus 776 820 IPR003888 GO:0005634
Gabi4029g00002 983 SMART JmjN_1 42 84 IPR003349 -
Gabi4029g00002 983 Gene3D Cupin 28 400 - -
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 601 631 - -
Gabi4029g00002 983 Pfam F/Y rich C-terminus 827 913 IPR003889 GO:0005634
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 603 622 - -
Gabi4029g00002 983 Pfam C5HC2 zinc finger 506 558 IPR004198 -
Gabi4029g00002 983 SMART fyrn_3 779 823 IPR003888 GO:0005634
Gabi4029g00002 983 Pfam jmjN domain 44 77 IPR003349 -
Gabi4029g00002 983 ProSiteProfiles JmjC domain profile. 253 416 IPR003347 -
Gabi4029g00002 983 ProSiteProfiles FYR domain FYRC motif profile. 825 916 IPR003889 GO:0005634
Gabi4029g00002 983 Pfam JmjC domain, hydroxylase 283 399 IPR003347 -
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 115 133 - -
Gabi4029g00002 983 SMART cupin_9 253 416 IPR003347 -
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 1 18 - -
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 107 152 - -
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 1 28 - -
Gabi4029g00002 983 SMART fyrc_3 829 921 IPR003889 GO:0005634
Gabi4029g00002 983 MobiDBLite consensus disorder prediction 134 152 - -
Gabi4029g00002 983 SUPERFAMILY Clavaminate synthase-like 246 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4029g00002 Gabi-Chr4029 40827 46999 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4029g00002 51 917 JUMONJI Transcription Factor Family AT4G20400 48.050 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi4029g00002 JmjC 9.6e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4029g00002 K11446 - gmx:100784581 1404.81