Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4024g00026 ATGAGTCAACTCGGTGTGATATTGCAGGAATCGCTACGGACACAGAGTGAGCCAAGAACGATTCTCGGTTTGTTGACGGAGCAAATGGACGGTGTAGATGAAGGCTCTCGCAGGAGGCGTAGCTTCAAGGAACGGCTGGGATTCATCGGCATGGGTTGTTGTGGGGCCACCTGGGGATTCCGTTCCGCTTCTTTAACTGTCAGGGATGATGGACAACAAGAACAACCACACCAACAGCAGCACCAGCTTCATGAAACGGATCCGGGTCAAGATCCGAACGGTTCGGGACCCGAATGCGTGGGTCCGACTCCTGCTGGTTCGAGTATGAATCTGGCGGCGGCGTTGGCGGCGGAGCGACAACTCCGGGGACCGCAGGAAGAGCCCGGAGCTGGCGGCGAAGGAAGCAGGGACAGCGTGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGACGGAGGGTGGGGGGGACGCGGCGGAGGTGGTGGAGGAGGAGAAAAGAGAAGGAGGAGGAGGAGCGGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGGAGGAAGAAAGGAGCAGCTTTCATCCCATGTGGACATACTTTTTGCAGGGTGTGTTCGAGGGAACTGTGGCTGAATCGAGGGTCTTGTCCCCTTTGCAATCGTTCCATCCTCGAGATTCTCGACATTTTCTAG 696 0.5805 MSQLGVILQESLRTQSEPRTILGLLTEQMDGVDEGSRRRRSFKERLGFIGMGCCGATWGFRSASLTVRDDGQQEQPHQQQHQLHETDPGQDPNGSGPECVGPTPAGSSMNLAAALAAERQLRGPQEEPGAGGEGSRDSVPGTPWRVSLMRLLEETEGGGDAAEVVEEEKREGGGGAVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4024g00026 231 ProSiteProfiles Zinc finger RING-type profile. 183 221 IPR001841 -
Gabi4024g00026 231 PANTHER OS01G0917900 PROTEIN 5 231 - -
Gabi4024g00026 231 Pfam Zinc finger, C3HC4 type (RING finger) 180 225 - -
Gabi4024g00026 231 MobiDBLite consensus disorder prediction 67 107 - -
Gabi4024g00026 231 MobiDBLite consensus disorder prediction 120 142 - -
Gabi4024g00026 231 SUPERFAMILY RING/U-box 179 228 - -
Gabi4024g00026 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 230 IPR013083 -
Gabi4024g00026 231 CDD RING-HC 183 220 - -
Gabi4024g00026 231 SMART ring_2 183 220 IPR001841 -
Gabi4024g00026 231 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4024g00026 Gabi-Chr4024 278091 279256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4024g00026 21 231 C3H Transcription Factor Family AT4G22250 51.121 3.43e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4024g00026 - - gmx:106799504 273.863